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(-) Description

Title :  THEORETICAL MODEL OF HUMAN CONE ARRESTIN: THE COMPLETE STRUCTURE.(RES 1-388)
 
Authors :  Y. Ling, S. K. Gregurick
Date :  23 Jun 05  (Deposition) - 12 Jul 05  (Release) - 12 Jul 05  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Signal Protein, Gpcr (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Ling, S. K. Gregurick
Theoretical Model Of The Three-Dimensional Structure Of Human Cone Arrestin:Structual Analysis And Molecular Dynamics Simulations
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ARRESTIN-C
    ChainsA
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    SynonymCONE ARRESTIN, RETINAL CONE ARRESTIN 3, X- ARRESTIN, C- ARRESTIN

 Structural Features

(-) Chains, Units

  
Theoretical Model 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2A34)

(-) Sites  (0, 0)

(no "Site" information available for 2A34)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2A34)

(-) Cis Peptide Bonds  (1, 1)

Theoretical Model
No.Residues
1Val A:83 -Pro A:84

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Theoretical Model (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_025520L44FARRC_HUMANPolymorphism17855428AL44F

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Theoretical Model (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ARRESTINSPS00295 Arrestins signature.ARRC_HUMAN57-75  1A:57-75

(-) Exons   (16, 16)

Theoretical Model (16, 16)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1dENST000003079591dENSE00001890423X:69488202-6948822221ARRC_HUMAN-00--
1.2ENST000003079592ENSE00002197171X:69489206-6948924338ARRC_HUMAN1-331A:1-33
1.3aENST000003079593aENSE00001041353X:69489512-6948954231ARRC_HUMAN3-13111A:3-1311
1.3dENST000003079593dENSE00000672312X:69489693-6948975361ARRC_HUMAN14-34211A:14-3421
1.4ENST000003079594ENSE00000672311X:69489950-6948999445ARRC_HUMAN34-49161A:34-4916
1.5ENST000003079595ENSE00000672310X:69495932-69496131200ARRC_HUMAN49-115671A:49-11567
1.6ENST000003079596ENSE00000672309X:69496283-6949634260ARRC_HUMAN116-135201A:116-13520
1.7bENST000003079597bENSE00000672308X:69496519-6949658668ARRC_HUMAN136-158231A:136-15823
1.8ENST000003079598ENSE00000672307X:69497244-69497379136ARRC_HUMAN158-203461A:158-20346
1.9ENST000003079599ENSE00000672306X:69497566-6949765085ARRC_HUMAN204-232291A:204-23229
1.10ENST0000030795910ENSE00000672305X:69497916-6949798873ARRC_HUMAN232-256251A:232-25625
1.11ENST0000030795911ENSE00000672304X:69498354-69498491138ARRC_HUMAN256-302471A:256-30247
1.12ENST0000030795912ENSE00001329678X:69500045-6950012884ARRC_HUMAN302-330291A:302-33029
1.13ENST0000030795913ENSE00001329160X:69500409-6950043224ARRC_HUMAN330-33891A:330-3389
1.14ENST0000030795914ENSE00001275564X:69500616-6950066853ARRC_HUMAN338-356191A:338-35619
1.15aENST0000030795915aENSE00001725604X:69500949-6950095810ARRC_HUMAN356-35941A:356-3594
1.16bENST0000030795916bENSE00001275540X:69501526-69501690165ARRC_HUMAN359-388301A:359-38830

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:388
 aligned with ARRC_HUMAN | P36575 from UniProtKB/Swiss-Prot  Length:388

    Alignment length:388
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380        
           ARRC_HUMAN     1 MSKVFKKTSSNGKLSIYLGKRDFVDHVDTVEPIDGVVLVDPEYLKCRKLFVMLTCAFRYGRDDLEVIGLTFRKDLYVQTLQVVPAESSSPQGPLTVLQERLLHKLGDNAYPFTLQMVTNLPCSVTLQPGPEDAGKPCGIDFEVKSFCAENPEETVSKRDYVRLVVRKVQFAPPEAGPGPSAQTIRRFLLSAQPLQLQAWMDREVHYHGEPISVNVSINNCTNKVIKKIKISVDQITDVVLYSLDKYTKTVFIQEFTETVAANSSFSQSFAVTPILAASCQKRGLALDGKLKHEDTNLASSTIIRPGMDKELLGILVSYKVRVNLMVSCGGILGDLTASDVGVELPLVLIHPKPSHEAASSEDIVIEEFTRKGEEESQKAVEAEGDEGS 388
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee......eeee...eeee.......eeeeee.hhhhhh..eeeeeeeeeeee...........eeeeeeeeeeeee...........hhhhhhhhhhh...eeeeee.........eeee.........eeeeeeeeeeee...........eeeeeeeeee............eeeee.......eeeeeee...eee....eeeeeeeee.....eeeeeeeeeeeeee.....eeeeeeeeeeee.......eeeeeeeee..hhhhh.....eee......................hhhh.eeeeeeeeeeeee............eeeeeeeeeee..............ee....................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------F-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------ARRESTINS          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.2----------Exon 1.3d            --------------Exon 1.5  PDB: A:49-115 UniProt: 49-115                            Exon 1.6            Exon 1.7b              -------------------------------------------------------------------------Exon 1.10  PDB: A:232-256---------------------------------------------Exon 1.12  PDB: A:302-330    -------Exon 1.14          --Exon 1.16b  PDB: A:359-388     Transcript 1 (1)
           Transcript 1 (2) --Exon 1.3a  --------------------Exon 1.4        ------------------------------------------------------------------------------------------------------------Exon 1.8  PDB: A:158-203 UniProt: 158-203     Exon 1.9  PDB: A:204-232     -----------------------Exon 1.11  PDB: A:256-302 UniProt: 256-302     ---------------------------Exon 1.13-----------------1.15----------------------------- Transcript 1 (2)
                 2a34 A   1 MSKVFKKTSSNGKLSIYLGKRDFVDHVDTVEPIDGVVLVDPEYLKCRKLFVMLTCAFRYGRDDLEVIGLTFRKDLYVQTLQVVPAESSSPQGALTVLQERLLHKLGDNAYPFTLQMVTNLPCSVTLQPGPEDAGKPCGIDFEVKSFCAENPEETVSKRDYVRLVVRKVQFAPPEAGPGPSAQTIRRFLLSAQPLQLQAWMDREVHYHGEPISVNVSINNCTNKVIKKIKISVDQITDVVLYSLDKYTKTVFIQEFTETVAANSSFSQSFAVTPILAASCQKRGLALDGKLKHEDTNLASSTIIRPGMDKELLGILVSYKVRVNLMVSCGGILGDLTASDVGVELPLVLIHPKPSHEAASSEDIVIEEFTRKGEEESQKAVEAEGDEGS 388
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2A34)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2A34)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2A34)

(-) Gene Ontology  (13, 13)

Theoretical Model(hide GO term definitions)
Chain A   (ARRC_HUMAN | P36575)
molecular function
    GO:0002046    opsin binding    Interacting selectively and non-covalently with an opsin, any of a group of hydrophobic, integral membrane glycoproteins located primarily in the disc membrane of rods or cones, involved in photoreception.
    GO:0051219    phosphoprotein binding    Interacting selectively and non-covalently with a phosphorylated protein.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
biological process
    GO:0006897    endocytosis    A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
    GO:0001932    regulation of protein phosphorylation    Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein.
    GO:0050896    response to stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007601    visual perception    The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0001917    photoreceptor inner segment    The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs.
    GO:0001750    photoreceptor outer segment    The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

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    Val A:83 - Pro A:84   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARRC_HUMAN | P365751xeh

(-) Related Entries Specified in the PDB File

1xeh THE CARBOXYL TAIL (RES 357-388) WAS ADDED TO COMPLETE THE MODEL OF HUMAN CONE ARRESTIN.