244D | UDF036 - JenaLib

Title :   THE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A PARALLEL-STRANDED GUANINE TETRAPLEX

Authors :   G. Laughlan, A. I. H. Murchie, D. G. Norman, M. H. Moore, P. C. E. Moody, D. M. J. Lilley, B. Luisi

Date :   19 Oct 95 (Deposition) - 23 Feb 96 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.20

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: E,F,G,H  (1x)
Biol. Unit 3: I,J,K,L  (1x)
Biol. Unit 4: M,N,O,P  (1x)

Keywords :   Unusual Dna, Quadruple Helix, Parallel-Stranded Tetraplex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Laughlan, A. I. Murchie, D. G. Norman, M. H. Moore, P. C. Moody, D. M. Lilley, B. Luisi
The High-Resolution Crystal Structure Of A Parallel-Stranded Guanine Tetraplex.
Science V. 265 520 1994
PubMed-ID: 8036494
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 23)

Sites (23, 23)

Asymmetric Unit (23, 23)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	NA I:158 , DG M:122 , DG M:123 , DG N:132 , DG N:133 , DG O:142 , DG O:143 , DG P:152 , DG P:153	BINDING SITE FOR RESIDUE NA M 157
02	AC2	SOFTWARE	DG I:82 , DG J:92 , DG K:102 , DG L:112 , NA L:162 , DG M:122 , NA M:157 , DG N:132 , DG O:142 , DG P:152	BINDING SITE FOR RESIDUE NA I 158
03	AC3	SOFTWARE	DG A:2 , DG A:3 , NA A:160 , DG B:12 , DG B:13 , DG C:22 , DG C:23 , DG D:32 , DG D:33	BINDING SITE FOR RESIDUE NA A 159
04	AC4	SOFTWARE	DG A:2 , NA A:159 , DG B:12 , DG C:22 , DG D:32 , DG E:42 , NA E:161 , DG F:52 , DG G:62 , DG H:72	BINDING SITE FOR RESIDUE NA A 160
05	AC5	SOFTWARE	NA A:160 , DG E:42 , DG E:43 , NA E:165 , DG F:52 , DG F:53 , DG G:62 , DG G:63 , DG H:72 , DG H:73	BINDING SITE FOR RESIDUE NA E 161
06	AC6	SOFTWARE	DG I:82 , DG I:83 , NA I:158 , NA I:167 , DG J:92 , DG J:93 , DG K:102 , DG K:103 , DG L:112 , DG L:113	BINDING SITE FOR RESIDUE NA L 162
07	AC7	SOFTWARE	DG M:123 , DG M:124 , DG N:133 , DG N:134 , DG O:143 , DG O:144 , DG P:153 , DG P:154	BINDING SITE FOR RESIDUE NA M 163
08	AC8	SOFTWARE	DG A:3 , DG A:4 , DG B:13 , DG B:14 , DG C:23 , DG C:24 , DG D:33 , DG D:34	BINDING SITE FOR RESIDUE NA B 164
09	AC9	SOFTWARE	DG E:43 , DG E:44 , NA E:161 , DG F:53 , DG F:54 , DG G:63 , DG G:64 , DG H:73 , DG H:74	BINDING SITE FOR RESIDUE NA E 165
10	BC1	SOFTWARE	DG I:85 , HOH I:200 , DG J:95 , DG K:105 , DG L:115	BINDING SITE FOR RESIDUE NA I 166
11	BC2	SOFTWARE	DG I:83 , DG I:84 , DG J:93 , DG J:94 , DG K:103 , DG K:104 , DG L:113 , DG L:114 , NA L:162	BINDING SITE FOR RESIDUE NA I 167
12	BC3	SOFTWARE	DG M:125 , DG N:135 , HOH N:208 , DG O:145 , DG P:155	BINDING SITE FOR RESIDUE NA M 168
13	BC4	SOFTWARE	DG E:45 , DG F:55 , DG G:65 , HOH G:194 , DG H:75	BINDING SITE FOR RESIDUE NA E 169
14	BC5	SOFTWARE	DG A:5 , HOH A:205 , DG B:15 , DG C:25 , DG D:35	BINDING SITE FOR RESIDUE NA A 170
15	BC6	SOFTWARE	HOH J:206 , HOH M:188 , HOH P:198 , HOH P:213 , HOH P:253 , HOH P:267 , HOH P:541	BINDING SITE FOR RESIDUE CA M 171
16	BC7	SOFTWARE	HOH K:226 , HOH O:199 , HOH O:202 , HOH O:392 , HOH O:409 , HOH O:460 , HOH P:192 , HOH P:364	BINDING SITE FOR RESIDUE CA P 172
17	BC8	SOFTWARE	HOH I:189 , HOH M:195 , HOH M:216 , HOH M:291 , HOH M:293 , HOH M:373 , HOH M:402 , HOH N:184	BINDING SITE FOR RESIDUE CA N 173
18	BC9	SOFTWARE	DT G:61 , HOH L:228 , HOH L:244 , HOH L:261 , HOH N:201 , HOH N:207 , HOH O:229	BINDING SITE FOR RESIDUE CA L 174
19	CC1	SOFTWARE	HOH C:190 , HOH C:234 , HOH C:507 , HOH D:222 , HOH D:256 , HOH H:232 , DT K:101	BINDING SITE FOR RESIDUE CA D 175
20	CC2	SOFTWARE	HOH B:187 , HOH B:215 , HOH B:356 , HOH B:400 , HOH B:428 , HOH C:191 , HOH E:197 , HOH E:382	BINDING SITE FOR RESIDUE CA C 176
21	CC3	SOFTWARE	HOH A:182 , HOH D:186 , HOH D:196 , HOH D:300 , HOH D:321 , HOH D:339 , HOH D:420 , HOH G:185	BINDING SITE FOR RESIDUE CA A 177
22	CC4	SOFTWARE	HOH A:180 , HOH A:181 , HOH A:266 , HOH B:193 , HOH E:220 , HOH F:183 , HOH I:218	BINDING SITE FOR RESIDUE CA B 178
23	CC5	SOFTWARE	HOH A:323 , HOH D:227 , HOH D:231 , HOH D:233 , HOH D:276 , HOH D:292 , HOH D:298	BINDING SITE FOR RESIDUE CA A 179

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:6
                                      
                 244d A   1 TGGGGT   6

Chain B from PDB  Type:DNA  Length:6
                                      
                 244d B  11 TGGGGT  16

Chain C from PDB  Type:DNA  Length:6
                                      
                 244d C  21 TGGGGT  26

Chain D from PDB  Type:DNA  Length:6
                                      
                 244d D  31 TGGGGT  36

Chain E from PDB  Type:DNA  Length:6
                                      
                 244d E  41 TGGGGT  46

Chain F from PDB  Type:DNA  Length:6
                                      
                 244d F  51 TGGGGT  56

Chain G from PDB  Type:DNA  Length:6
                                      
                 244d G  61 TGGGGT  66

Chain H from PDB  Type:DNA  Length:6
                                      
                 244d H  71 TGGGGT  76

Chain I from PDB  Type:DNA  Length:6
                                      
                 244d I  81 TGGGGT  86

Chain J from PDB  Type:DNA  Length:6
                                      
                 244d J  91 TGGGGT  96

Chain K from PDB  Type:DNA  Length:6
                                      
                 244d K 101 TGGGGT 106

Chain L from PDB  Type:DNA  Length:6
                                      
                 244d L 111 TGGGGT 116

Chain M from PDB  Type:DNA  Length:6
                                      
                 244d M 121 TGGGGT 126

Chain N from PDB  Type:DNA  Length:6
                                      
                 244d N 131 TGGGGT 136

Chain O from PDB  Type:DNA  Length:6
                                      
                 244d O 141 TGGGGT 146

Chain P from PDB  Type:DNA  Length:6
                                      
                 244d P 151 TGGGGT 156

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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