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(-) Description

Title :  SOLUTION STRUCTURE OF MITHRAMYCIN DIMERS BOUND TO PARTIALLY OVERLAPPING SITES ON DNA
 
Authors :  M. Sastry, R. Fiala, D. J. Patel
Date :  20 Apr 95  (Deposition) - 15 Sep 95  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (8x)
Keywords :  Dna, Nmr, Double Helix, Mithramycin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sastry, R. Fiala, D. J. Patel
Solution Structure Of Mithramycin Dimers Bound To Partially Overlapping Sites On Dna.
J. Mol. Biol. V. 251 674 1995
PubMed-ID: 7666419  |  Reference-DOI: 10.1006/JMBI.1995.0464
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*TP*AP*GP*CP*TP*AP*GP*CP*TP*A)-3')
    Chains: A, B
    Engineered: YES
    Other Details: CHEMICALLY SYNTHESIZED
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (8x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 26)

NMR Structure (5, 26)
No.NameCountTypeFull Name
1CRH4Ligand/Ion1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE
2DDA12Ligand/Ion2,6-DIDEOXY-BETA-D-GLUCOSE
3DDL4Ligand/Ion2,6-DIDEOXY-BETA-D-GALACTOSE
4MDA4Ligand/Ion2,6-DIDEOXY-3 C-METHYL-D-RIBOPYRANOSIDE
5MG2Ligand/IonMAGNESIUM ION

(-) Sites  (26, 26)

NMR Structure (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREDG A:3 , DC A:4 , DDA A:12BINDING SITE FOR RESIDUE DDA A 11
02AC2SOFTWAREDG A:3 , DC A:4 , DDA A:11 , CRH A:13 , MDA A:18C , DDL B:18BBINDING SITE FOR RESIDUE DDA A 12
03AC3SOFTWARECRH A:13 , DDL A:14B , CRH B:17BINDING SITE FOR RESIDUE DDA A 14A
04AC4SOFTWAREDDA A:14A , MDA A:29C , DDA B:16 , CRH B:17BINDING SITE FOR RESIDUE DDL A 14B
05AC5SOFTWAREDG B:7 , DC B:8 , DDA B:16BINDING SITE FOR RESIDUE DDA B 15
06AC6SOFTWAREDDL A:14B , MDA A:29C , DG B:7 , DC B:8 , DDA B:15 , CRH B:17BINDING SITE FOR RESIDUE DDA B 16
07AC7SOFTWAREDT B:9 , CRH B:17 , DDL B:18BBINDING SITE FOR RESIDUE DDA B 18A
08AC8SOFTWAREDDA A:12 , CRH A:13 , MDA A:18C , DDA B:18ABINDING SITE FOR RESIDUE DDL B 18B
09AC9SOFTWAREDG B:3 , DC B:4 , DDA B:22BINDING SITE FOR RESIDUE DDA B 21
10BC1SOFTWAREDDL A:28B , DG B:3 , DC B:4 , DDA B:21 , CRH B:23 , MDA B:28CBINDING SITE FOR RESIDUE DDA B 22
11BC2SOFTWARECRH A:27 , CRH B:23 , DDL B:24BBINDING SITE FOR RESIDUE DDA B 24A
12BC3SOFTWAREDDA A:26 , CRH A:27 , DDA B:24A , MDA B:30CBINDING SITE FOR RESIDUE DDL B 24B
13BC4SOFTWAREDG A:7 , DC A:8 , DDA A:26BINDING SITE FOR RESIDUE DDA A 25
14BC5SOFTWAREDG A:7 , DC A:8 , DDA A:25 , CRH A:27 , DDL B:24B , MDA B:30CBINDING SITE FOR RESIDUE DDA A 26
15BC6SOFTWAREDT A:9 , CRH A:27 , DDL A:28BBINDING SITE FOR RESIDUE DDA A 28A
16BC7SOFTWAREDDA A:28A , DDA B:22 , CRH B:23 , MDA B:28CBINDING SITE FOR RESIDUE DDL A 28B
17BC8SOFTWARECRH A:13 , CRH B:17BINDING SITE FOR RESIDUE MG A 19
18BC9SOFTWARECRH A:27 , CRH B:23BINDING SITE FOR RESIDUE MG B 29
19CC1SOFTWAREDG A:3 , DC A:4 , DT A:5 , DDA A:12 , DDA A:14A , MDA A:18C , MG A:19 , CRH B:17 , DDL B:18BBINDING SITE FOR RESIDUE CRH A 13
20CC2SOFTWAREDT A:5 , DA A:6 , DDL A:14B , DA B:6 , DDA B:16 , CRH B:17 , MDA B:30CBINDING SITE FOR RESIDUE MDA A 29C
21CC3SOFTWAREDT A:5 , CRH A:13 , DDA A:14A , DDL A:14B , MG A:19 , MDA A:29C , DG B:7 , DC B:8 , DT B:9 , DDA B:16 , DDA B:18ABINDING SITE FOR RESIDUE CRH B 17
22CC4SOFTWAREDA A:2 , DG A:3 , DDA A:12 , CRH A:13 , DDL B:18BBINDING SITE FOR RESIDUE MDA A 18C
23CC5SOFTWARECRH A:27 , DDL A:28B , DG B:3 , DC B:4 , DT B:5 , DDA B:22 , DDA B:24A , MDA B:28C , MG B:29BINDING SITE FOR RESIDUE CRH B 23
24CC6SOFTWAREDA A:6 , DDA A:26 , CRH A:27 , MDA A:29C , DT B:5 , DA B:6 , DDL B:24BBINDING SITE FOR RESIDUE MDA B 30C
25CC7SOFTWAREDG A:7 , DC A:8 , DT A:9 , DDA A:26 , DDA A:28A , DT B:5 , CRH B:23 , DDA B:24A , DDL B:24B , MG B:29 , MDA B:30CBINDING SITE FOR RESIDUE CRH A 27
26CC8SOFTWAREDDL A:28B , DA B:2 , DG B:3 , DDA B:22 , CRH B:23BINDING SITE FOR RESIDUE MDA B 28C

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 207D)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:10
                                         
                  207d A  1 TAGCTAGCTA 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  207d B  1 TAGCTAGCTA 10
                                    10
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 Classification and Annotation

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  207d
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