1ZNF - JenaLib

Title :   THREE-DIMENSIONAL SOLUTION STRUCTURE OF A SINGLE ZINC FINGER DNA-BINDING DOMAIN

Authors :   M. S. Lee, G. P. Gippert, K. V. Soman, D. A. Case, P. E. Wright

Date :   25 Sep 89 (Deposition) - 15 Jul 91 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (37x)

Keywords :   Zinc Finger Dna Binding Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. S. Lee, G. P. Gippert, K. V. Soman, D. A. Case, P. E. Wright
Three-Dimensional Solution Structure Of A Single Zinc Finger Dna-Binding Domain.
Science V. 245 635 1989
PubMed-ID: 2503871
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 3)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

NMR Structure (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZINC_FINGER_C2H2_1	PS00028	Zinc finger C2H2 type domain signature.	XFIN_XENLA	138-158 166-186 194-214 222-242 250-270 278-298 328-348 356-376 384-404 412-432 440-460 468-488 505-525 533-553 561-581 589-609 617-637 645-665 673-693 701-721 752-772 780-800 808-828 836-856 864-884 892-912 920-940 990-1010 1018-1038 1046-1066 1138-1158 1166-1186 1194-1214 1222-1242 1250-1270	1	- - - - - - - - - - - - - - - - - - - - - - - - - - - - - A:3-23 - - - - -

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:27
 aligned with XFIN_XENLA | P08045 from UniProtKB/Swiss-Prot  Length:1350

    Alignment length:27
                                  1052      1062       
          XFIN_XENLA   1043 PYKCGLCERSFVEKSALSRHQRVHKNE 1069
               SCOP domains d1znfa_ A:                  SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains -zf-C2H2-1znfA01 A:1-23 --- Pfam domains
         Sec.struct. author .eeee..eeee.hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE ---ZINC_FINGER_C2H2_1   --- PROSITE
                 Transcript --------------------------- Transcript
                1znf A    0 xYKCGLCERSFVEKSALSRHQRVHKNx   26
                            |        9        19      |
                            |                        26-NH2
                            0-ACE

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (6, 6)

NMR Structure(hide GO term definitions)

Chain A (XFIN_XENLA | P08045)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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