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(-) Description

Title :  X-RAY STRUCTURE OF THE PUTATIVE PROTEIN Q6N1P6 FROM RHODOPSEUDOMONAS PALUSTRIS AT THE RESOLUTION 2.1 A , NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET RPR58
 
Authors :  A. P. Kuzin, W. Yong, S. M. Vorobiev, T. Acton, L. Ma, R. Xiao, G. Montelio L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (N
Date :  02 May 05  (Deposition) - 10 May 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nesg, Rpr58, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kuzin, W. Yong, S. M. Vorobiev, T. Acton, L. Ma, R. Xiao, G. Montelione, L. Tong, J. F. Hunt
X-Ray Structure Of The Putative Protein Q6N1P6 From Rhodopseudomonas Palustris At The Resolution 2. 1 A , Northeast Structural Genomics Consortium Target Rpr58
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DUF185
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3) + MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PET21
    Gene: RPA4359
    Organism Scientific: RHODOPSEUDOMONAS PALUSTRIS
    Organism Taxid: 258594
    Strain: CGA009

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric/Biological Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1ZKD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZKD)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:296 -Pro A:297
2Gly B:296 -Pro B:297

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZKD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZKD)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZKD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:357
 aligned with Q6N1P6_RHOPA | Q6N1P6 from UniProtKB/TrEMBL  Length:379

    Alignment length:365
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361     
         Q6N1P6_RHOPA     2 IDQTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSFEDVPEGPAVILANEYFDVLPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRDQGGAALIIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQGAFLKRLGIETRALSLMAKATPQVSEDIAGALQRLTGEGRGAMGSMFKVIGVSDPKIETLVALSDD 366
               SCOP domains d1zkda1 A:2-366 Hypothetical protein RPA4        359                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh.eehhhhhhhhhhh.........--------..hhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee....hhhhhhhhhhhh.hhhhhh.eeeeee..hhhhhhhhhhhh.....eeee.hhhhh....eeeeee.hhhhh..eeeeee..eeeeeeeee.....eeeee.......hhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhheeeeeeeeee.........eee....ee.........eee..eehhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhee..ee...eeeeeee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zkd A   2 IDQTALATEIKRLIKAAGPmPVWRYmELCLGHPEHGYYVTR--------FTTSPEISQmFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTmmADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSFEDVPEGPAVILANEYFDVLPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRDQGGAALIIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQGAFLKRLGIETRALSLmAKATPQVSEDIAGALQRLTGEGRGAmGSmFKVIGVSDPKIETLVALSDD 366
                                    11        21     |  31        41|       51        61        71        81        91  ||   101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311     | 321       331       341 |  |  351       361     
                                              21-MSE |             42       51       60-MSE                            94-MSE                                                                                                                                                                                                                        317-MSE                   343-MSE                   
                                                    27-MSE                                                              95-MSE                                                                                                                                                                                                                                                    346-MSE                


Chain B from PDB  Type:PROTEIN  Length:356
 aligned with Q6N1P6_RHOPA | Q6N1P6 from UniProtKB/TrEMBL  Length:379

    Alignment length:365
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361     
         Q6N1P6_RHOPA     2 IDQTALATEIKRLIKAAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSFEDVPEGPAVILANEYFDVLPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRDQGGAALIIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQGAFLKRLGIETRALSLMAKATPQVSEDIAGALQRLTGEGRGAMGSMFKVIGVSDPKIETLVALSDD 366
               SCOP domains d1zkdb_ B: Hypothetical protein RPA4359                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh.eehhhhhhhhhhh........---------..hhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee....hhhhhhhhhhhh.hhhhhh.eeeeee..hhhhhhhhhhhh.....eeee.hhhhh....eeeeee.hhhhh..eeeeee..eeeeeeeee.....eeeee............hhhhhhh....eeee..hhhhhhhhhhhhhhheeeeeeeeee.........eee....ee.........eee..eehhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhee..ee...eeeeeee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zkd B   2 IDQTALATEIKRLIKAAGPmPVWRYmELCLGHPEHGYYVT---------FTTSPEISQmFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTmmADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSFEDVPEGPAVILANEYFDVLPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDTEILKIASRVRDQGGAALIIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESIGARAHGPVTQGAFLKRLGIETRALSLmAKATPQVSEDIAGALQRLTGEGRGAmGSmFKVIGVSDPKIETLVALSDD 366
                                    11        21     |  31        41        51        61        71        81        91  ||   101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311     | 321       331       341 |  |  351       361     
                                              21-MSE |            41        51       60-MSE                            94-MSE                                                                                                                                                                                                                        317-MSE                   343-MSE                   
                                                    27-MSE                                                              95-MSE                                                                                                                                                                                                                                                    346-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZKD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZKD)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1ZKD)

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  Cis Peptide Bonds
    Gly A:296 - Pro A:297   [ RasMol ]  
    Gly B:296 - Pro B:297   [ RasMol ]  
 

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