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Title :  STRUCTURE OF AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE TYPE III FROM STAPHYLOCOCCUS AUREUS
 
Authors :  S. Mondal, R. Vijayan, R. M. Babu, S. Ramakumar
Date :  01 May 05  (Deposition) - 17 May 05  (Release) - 17 May 05  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Antibiotic Resistance, Kinase, Atp-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Mondal, R. Vijayan, R. M. Babu, S. Ramakumar
Aminoglycoside 3'-Phosphotransferase: An Insight Into Bacterial Resistance Mechanism
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AMINOGLYCOSIDE 3'-PHOSPHOTRANSFERASE
    Chains: A
    EC Number: 2.7.1.95
    Organism Common: BACTERIA
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Synonym: KANAMYCIN KINASE, TYPE III, NEOMYCIN-KANAMYCIN PHOSPHOTRANSFERASE, TYPE III, APH3', III

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ZJT)

(-) Sites  (0, 0)

(no "Site" information available for 1ZJT)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZJT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZJT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZJT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZJT)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZJT)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:262
 aligned with KKA3_STAAU | P0A3Y6 from UniProtKB/Swiss-Prot  Length:263

    Alignment length:262
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261  
           KKA3_STAAU     2 AKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVVHFERHDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSKIFVKDGKVSGFIDLGRSGRADKWYDIPFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF 263
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh..............eeee......eeeeeehhhhh....hhhhhhhhhhhhh.......eeeeeee..eeeeeee....eehhhhh....hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh.....hhhhhh......hhhhhhhhhhhh.....eeee........eeee..eeeee......eeee..hhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zjt A   2 AKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVVHFERHDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSKIFVKDGKVSGFIDLGRSGRADKWYDIPFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF 263
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1ZJT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZJT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZJT)

(-) Gene Ontology  (8, 8)

Theoretical Model(hide GO term definitions)
Chain A   (KKA3_STAAU | P0A3Y6)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0008910    kanamycin kinase activity    Catalysis of the reaction: ATP + kanamycin = ADP + 2 H(+) + kanamycin 3'-phosphate.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016773    phosphotransferase activity, alcohol group as acceptor    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

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        KKA3_STAAU | P0A3Y6: 2bkk

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