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(-) Description

Title :  METHIONYL-TRNA FORMYLTRANSFERASE FROM CLOSTRIDIUM THERMOCELLUM
 
Authors :  H. Yang, I. Kataeva, H. Xu, M. Zhao, J. Chang, Z. Liu, L. Chen, W. Tempel, J W. Zhou, D. Lee, D. Lin, S. Chang, W. B. Arendall Iii, J. S. Richardson, D. C. Richardson, J. P. Rose, B. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Date :  21 Apr 05  (Deposition) - 03 May 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A
Keywords :  Methionyl-Trna Formyltransferase, Southeast Collaboratory For Structural Genomics, Clostridium Thermocellum, Psi, Protein Structure Initiative, Secsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yang, I. Kataeva, H. Xu, M. Zhao, J. Chang, Z. Liu, L. Chen, W. Tempel, J. Habel, W. Zhou, D. Lee, D. Lin, S. Chang, W. B. Arendall Iii, J. S. Richardson, D. C. Richardson, J. P. Rose, B. Wang, Southeast Collaboratory For Structural Genomics
Methionyl-Trna Formyltransferase From Clostridium Thermocellum
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - METHIONYL-TRNA FORMYLTRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET-15G
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Scientific: CLOSTRIDIUM THERMOCELLUM
    Organism Taxid: 203119
    Strain: ATCC 27405

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 23)

Asymmetric/Biological Unit (2, 23)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
2UNX17Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:128 , UNX A:241BINDING SITE FOR RESIDUE UNX A 231
02AC2SOFTWARELYS A:9 , TYR A:193BINDING SITE FOR RESIDUE UNX A 232
03AC3SOFTWARELYS A:35BINDING SITE FOR RESIDUE UNX A 233
04AC4SOFTWAREGLY A:192 , ARG A:195BINDING SITE FOR RESIDUE UNX A 234
05AC5SOFTWAREGLY A:124 , GLU A:128 , TYR A:182BINDING SITE FOR RESIDUE UNX A 235
06AC6SOFTWARETHR A:125 , ILE A:185 , ARG A:186 , ASP A:189 , ARG A:209 , ALA A:210BINDING SITE FOR RESIDUE UNX A 236
07AC7SOFTWAREARG A:132 , GLU A:179 , UNX A:241BINDING SITE FOR RESIDUE UNX A 237
08AC8SOFTWAREASN A:12 , PRO A:54 , SER A:134 , ILE A:137BINDING SITE FOR RESIDUE UNX A 238
09AC9SOFTWAREILE A:218 , HOH A:278BINDING SITE FOR RESIDUE UNX A 239
10BC1SOFTWARETRP A:11 , ASN A:12 , HIS A:55BINDING SITE FOR RESIDUE UNX A 240
11BC2SOFTWAREARG A:132 , UNX A:231 , UNX A:237BINDING SITE FOR RESIDUE UNX A 241
12BC3SOFTWARELYS A:14 , MSE A:131 , ASN A:214 , HOH A:257BINDING SITE FOR RESIDUE UNX A 242
13BC4SOFTWARELYS A:199 , GLY A:201 , TYR A:203BINDING SITE FOR RESIDUE UNX A 243
14BC5SOFTWAREPHE A:73 , ILE A:137BINDING SITE FOR RESIDUE UNX A 244
15BC6SOFTWAREGLY A:215 , ILE A:224 , GLU A:225BINDING SITE FOR RESIDUE UNX A 245
16BC7SOFTWARELYS A:117BINDING SITE FOR RESIDUE UNX A 246
17BC8SOFTWARELYS A:99 , ASP A:119BINDING SITE FOR RESIDUE UNX A 247

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZGH)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:78 -Pro A:79

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZGH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZGH)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZGH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:227
 aligned with A3DHJ7_CLOTH | A3DHJ7 from UniProtKB/TrEMBL  Length:230

    Alignment length:227
                             1                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       
         A3DHJ7_CLOTH     - -MNIIIATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLINPEYILFPHWSWIIPKEIFENFTCVVFHMTDLPFGRGGSPLQNLIERGIKKTKISAIKVDGGIDTGDIFFKRDLDLYGTAEEIFMRASKIIFNDMIPELLTKRPVPQKQEGEATVFQRRKPEQSEISPDFDLEKIYDYIRMLDGEGYPRAFIKYGKYRLEFSRASMKNGKIIADVEIIEG 226
               SCOP domains -d1zgha2 A:1-164 Methionyl-tRNAfmet formyltransferase                                                                                                                d1zgha1 A:165-226                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -Formyl_trans_N-1zghA01 A:1-132                                                                                                      ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhh..eeee.......hhhhhh...eeeee.......ee.hhhhhhhhh...eeeeeeee.........eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh...........ee...hhhhhh.....hhhhhhhhhhhh........eeee..eeeeeeeeeee..eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zgh A   0 LmNIIIATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKVKLINPEYILFPHWSWIIPKEIFENFTCVVFHmTDLPFGRGGSPLQNLIERGIKKTKISAIKVDGGIDTGDIFFKRDLDLYGTAEEIFmRASKIIFNDmIPELLTKRPVPQKQEGEATVFQRRKPEQSEISPDFDLEKIYDYIRmLDGEGYPRAFIKYGKYRLEFSRASmKNGKIIADVEIIEG 226
                             |       9        19        29        39        49        59        69     |  79        89        99       109       119       129 |     139 |     149       159       169       179       189       199       209  |    219       
                             |                                                                        75-MSE                                                 131-MSE   141-MSE                                       187-MSE                  212-MSE          
                             1-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZGH)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Formyl_trans_N] (25)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (A3DHJ7_CLOTH | A3DHJ7)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016742    hydroxymethyl-, formyl- and related transferase activity    Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

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