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(-) Description

Title :  CRYSTAL STRUCTURE OF THE 3-HYDROXYACYL-COA DEHYDROGENASE (HBD-9, AF2017) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  18 Apr 05  (Deposition) - 03 May 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9 (Np_070841. 1) From Archaeoglobus Fulgidus At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 3-HYDROXYACYL-COA DEHYDROGENASE
    Chains: A
    EC Number: 1.1.1.35
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: HBD-9
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 224325
    Strain: DSM 4304
    Synonym: HBD-9

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
3PE81Ligand/Ion3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL
Biological Unit 1 (2, 14)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE12Mod. Amino AcidSELENOMETHIONINE
3PE82Ligand/Ion3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:56BINDING SITE FOR RESIDUE CL A 282
2AC2SOFTWAREILE A:132 , ARG A:134 , THR A:136 , SER A:138 , VAL A:157 , LYS A:159 , GLU A:181 , GLY A:182BINDING SITE FOR RESIDUE PE8 A 283

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZEJ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn A:120 -Pro A:121

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZEJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZEJ)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZEJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:282
 aligned with O28262_ARCFU | O28262 from UniProtKB/TrEMBL  Length:281

    Alignment length:282
                             1                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279  
         O28262_ARCFU     - -MKVFVIGAGLMGRGIAIAIASKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLTNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQSLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGPKAYEERVERLKKLLRFLGLE 281
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains --3HCDH_N-1zejA02 A:2-161                                                                                                                                         -3HCDH-1zejA01 A:163-259                                                                          ---------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhh.eeee....hhhhh.eeee....hhhhhhhhhhhhhh.....eee.....hhhhhhh...hhh.eeeeee........eeeeee....hhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhh........hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1zej A   0 HmKVFVIGAGLmGRGIAIAIASKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEKVKDCDIVmEAVFEDLNTKVEVLREVERLTNAPLCSNTSVISVDDIAERLDSPSRFLGVHWmNPPHVmPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQSLVNRFNAAVLSEASRmIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGPKAYEERVERLKKLLRFLGLE 281
                             |       9 |      19        29        39        49        59      | 69        79        89        99       109       119     | 129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279  
                             |        11-MSE                                                 66-MSE                                              119-MSE |                                                  178-MSE                                                                                                   
                             1-MSE                                                                                                                     125-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1ZEJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZEJ)

(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: 6PGD_C (47)
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (O28262_ARCFU | O28262)
molecular function
    GO:0003857    3-hydroxyacyl-CoA dehydrogenase activity    Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H(+).
    GO:0070403    NAD+ binding    Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006631    fatty acid metabolic process    The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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