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(-) Description

Title :  MOLECULAR MODELLING OF TGH-2 GENE ENCODING PROTEIN
 
Authors :  S. Vimala, N. Mathew
Date :  12 Apr 05  (Deposition) - 28 Mar 06  (Release) - 28 Mar 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Growth Factor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Vimala, N. Mathew
Molecular Modelling Of Tgh-2 Gene Encoding Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRANSFORMING GROWTH FACTOR B HOMOLOG
    Chains: A
    Fragment: C-TERMINAL DOMAIN, RESIDUES 1-96
    Organism Common: FILARIAL NEMATODE WORM
    Organism Scientific: BRUGIA MALAYI

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ZCG)

(-) Sites  (0, 0)

(no "Site" information available for 1ZCG)

(-) SS Bonds  (1, 1)

Theoretical Model
No.Residues
1A:31 -A:93

(-) Cis Peptide Bonds  (1, 1)

Theoretical Model
No.Residues
1Ala A:22 -Pro A:23

 Sequence-Structure Mapping

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(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:96
 aligned with O97138_BRUMA | O97138 from UniProtKB/TrEMBL  Length:349

    Alignment length:96
                                   263       273       283       293       303       313       323       333       343      
         O97138_BRUMA   254 PSCCLYSLVVDFEAAGWDFVIAPKLYDAHMCSGECRLHHAGRSAHSKITSSTKKNAVSGCCHPTEYDPITLVYMTQEKELKIREVPGMIARRCACA 349
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee..eeehhhhh...eee..eee..eee..........hhhhhhhhhh.......eeee..eeeeeeeee.....eeeeeeeeeee..eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 1zcg A   1 PSCCLYSLVVDFEAAGWDFVIAPKLYDAHMCSGECRLHHAGRSAHSKITSSTKKNAVSGCCHPTEYDPITLVYMTQEKELKIREVPGMIARRCACA  96
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1ZCG)

(-) Gene Ontology  (2, 2)

Theoretical Model(hide GO term definitions)
Chain A   (O97138_BRUMA | O97138)
molecular function
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  Cis Peptide Bonds
    Ala A:22 - Pro A:23   [ RasMol ]  
 

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  1zcg
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(-) Related Entries Specified in the PDB File

2tgi CRYSTAL STRUCTURE OF TRANSFORMING GROWTH FACTOR- 2: AN UNUSUAL FOLD FOR THE SUPERFAMILY.