Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN 17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 4 IN COMPLEX WITH NAD
 
Authors :  P. Lukacik, N. Shafqat, K. Kavanagh, J. Bray, F. Von Delft, A. Edwards, C. Arrowsmith, M. Sundstrom, U. Oppermann, Structural Genomics Co (Sgc)
Date :  08 Apr 05  (Deposition) - 26 Apr 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.71
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Short-Chain Dehydrogenase, Hydroxysteroid Dehydrogenase, Peroxisomal Beta-Oxidation, Human, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Lukacik, N. Shafqat, K. Kavanagh, J. Bray, F. Von Delft, A. Edwards C. Arrowsmith, M. Sundstrom, U. Oppermann
Crystal Structure Of Human 17-Beta-Hydroxysteroid Dehydrogenase Type 4 In Complex With Nad
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 17-BETA-HYDROXYSTEROID DEHYDROGENASE 4
    ChainsA, B, C, D, E, F
    EC Number1.1.1.35
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidP11 (TORONTO)
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentN-TERMINAL SHORT CHAIN DEHYDROGENASE DOMAIN
    GeneHSD17B4, EDH17B4
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymD-BIFUNCTIONAL PROTEIN, DBP, PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 2, MFE-2, 17-BETA-HSD 4, 3-HYDROXYACYL-COA DEHYDROGENASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)AB    
Biological Unit 2 (1x)  CD  
Biological Unit 3 (1x)    EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1NAD6Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:16 , ALA A:19 , GLY A:20 , LEU A:21 , ASN A:39 , ASP A:40 , LEU A:41 , SER A:75 , VAL A:76 , ASN A:99 , ALA A:100 , GLY A:101 , ILE A:102 , HIS A:123 , THR A:149 , SER A:150 , SER A:151 , TYR A:164 , LYS A:168 , PRO A:194 , ASN A:195 , ALA A:196 , SER A:198 , ARG A:199 , MET A:200 , HOH A:1002 , HOH A:1011 , HOH A:1012BINDING SITE FOR RESIDUE NAD A 1001
2AC2SOFTWAREGLY B:16 , ALA B:19 , GLY B:20 , LEU B:21 , ASN B:39 , ASP B:40 , LEU B:41 , SER B:75 , VAL B:76 , ASN B:99 , ALA B:100 , GLY B:101 , ILE B:102 , VAL B:122 , HIS B:123 , THR B:149 , SER B:150 , SER B:151 , TYR B:164 , LYS B:168 , PRO B:194 , ASN B:195 , ALA B:196 , SER B:198 , ARG B:199 , MET B:200 , THR B:201 , HOH B:1003 , HOH B:1004 , HOH B:1024 , HOH B:1031 , HOH B:1039 , HOH B:1056BINDING SITE FOR RESIDUE NAD B 1002
3AC3SOFTWAREGLY C:16 , ALA C:19 , GLY C:20 , LEU C:21 , ASN C:39 , ASP C:40 , LEU C:41 , GLY C:43 , SER C:75 , VAL C:76 , ASN C:99 , ALA C:100 , GLY C:101 , HIS C:123 , THR C:149 , SER C:150 , SER C:151 , TYR C:164 , LYS C:168 , PRO C:194 , ASN C:195 , ALA C:196 , SER C:198 , ARG C:199 , MET C:200 , HOH C:1006 , HOH C:1007 , HOH C:1015 , HOH C:1026 , HOH C:1047BINDING SITE FOR RESIDUE NAD C 1003
4AC4SOFTWAREGLY D:16 , ALA D:19 , GLY D:20 , LEU D:21 , ASN D:39 , ASP D:40 , LEU D:41 , SER D:75 , VAL D:76 , ASN D:99 , ALA D:100 , GLY D:101 , ILE D:102 , HIS D:123 , THR D:149 , SER D:150 , SER D:151 , TYR D:164 , LYS D:168 , PRO D:194 , ASN D:195 , ALA D:196 , SER D:198 , ARG D:199 , MET D:200 , THR D:201 , HOH D:1006 , HOH D:1011 , HOH D:1025BINDING SITE FOR RESIDUE NAD D 1004
5AC5SOFTWAREGLY E:16 , ALA E:19 , GLY E:20 , LEU E:21 , ASN E:39 , ASP E:40 , LEU E:41 , SER E:75 , VAL E:76 , ASN E:99 , ALA E:100 , GLY E:101 , HIS E:123 , THR E:149 , SER E:150 , SER E:151 , TYR E:164 , LYS E:168 , PRO E:194 , ASN E:195 , ALA E:196 , SER E:198 , ARG E:199 , MET E:200 , THR E:201 , HOH E:1006 , HOH E:1017BINDING SITE FOR RESIDUE NAD E 1005
6AC6SOFTWAREGLY F:16 , ALA F:19 , GLY F:20 , LEU F:21 , ASN F:39 , ASP F:40 , LEU F:41 , SER F:75 , VAL F:76 , ASN F:99 , ALA F:100 , GLY F:101 , HIS F:123 , THR F:149 , SER F:150 , SER F:151 , TYR F:164 , LYS F:168 , PRO F:194 , ASN F:195 , ALA F:196 , SER F:198 , ARG F:199 , MET F:200 , THR F:201 , HOH F:1007 , HOH F:1012 , HOH F:1026BINDING SITE FOR RESIDUE NAD F 1006

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZBQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZBQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (7, 42)

Asymmetric Unit (7, 42)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_037576G16SDHB4_HUMANDisease (DBPD)137853096A/B/C/D/E/FG16S
2UniProtVAR_052309F90LDHB4_HUMANPolymorphism28943588A/B/C/D/E/FF90L
3UniProtVAR_014872R106HDHB4_HUMANPolymorphism25640A/B/C/D/E/FR106H
4UniProtVAR_065906R106PDHB4_HUMANDisease (DBPD)25640A/B/C/D/E/FR106P
5UniProtVAR_052310K140NDHB4_HUMANPolymorphism28943589A/B/C/D/E/FK140N
6UniProtVAR_065907Y217CDHB4_HUMANDisease (PRLTS1)387906825A/B/C/D/E/FY217C
7UniProtVAR_024625T292SDHB4_HUMANPolymorphism1143650A/B/C/D/E/FT292S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (7, 14)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_037576G16SDHB4_HUMANDisease (DBPD)137853096A/BG16S
2UniProtVAR_052309F90LDHB4_HUMANPolymorphism28943588A/BF90L
3UniProtVAR_014872R106HDHB4_HUMANPolymorphism25640A/BR106H
4UniProtVAR_065906R106PDHB4_HUMANDisease (DBPD)25640A/BR106P
5UniProtVAR_052310K140NDHB4_HUMANPolymorphism28943589A/BK140N
6UniProtVAR_065907Y217CDHB4_HUMANDisease (PRLTS1)387906825A/BY217C
7UniProtVAR_024625T292SDHB4_HUMANPolymorphism1143650A/BT292S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (7, 14)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_037576G16SDHB4_HUMANDisease (DBPD)137853096C/DG16S
2UniProtVAR_052309F90LDHB4_HUMANPolymorphism28943588C/DF90L
3UniProtVAR_014872R106HDHB4_HUMANPolymorphism25640C/DR106H
4UniProtVAR_065906R106PDHB4_HUMANDisease (DBPD)25640C/DR106P
5UniProtVAR_052310K140NDHB4_HUMANPolymorphism28943589C/DK140N
6UniProtVAR_065907Y217CDHB4_HUMANDisease (PRLTS1)387906825C/DY217C
7UniProtVAR_024625T292SDHB4_HUMANPolymorphism1143650C/DT292S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (7, 14)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_037576G16SDHB4_HUMANDisease (DBPD)137853096E/FG16S
2UniProtVAR_052309F90LDHB4_HUMANPolymorphism28943588E/FF90L
3UniProtVAR_014872R106HDHB4_HUMANPolymorphism25640E/FR106H
4UniProtVAR_065906R106PDHB4_HUMANDisease (DBPD)25640E/FR106P
5UniProtVAR_052310K140NDHB4_HUMANPolymorphism28943589E/FK140N
6UniProtVAR_065907Y217CDHB4_HUMANDisease (PRLTS1)387906825E/FY217C
7UniProtVAR_024625T292SDHB4_HUMANPolymorphism1143650E/FT292S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_SHORTPS00061 Short-chain dehydrogenases/reductases family signature.DHB4_HUMAN151-179
 
 
 
 
 
  6A:151-179
B:151-179
C:151-179
D:151-179
E:151-179
F:151-179
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_SHORTPS00061 Short-chain dehydrogenases/reductases family signature.DHB4_HUMAN151-179
 
 
 
 
 
  2A:151-179
B:151-179
-
-
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_SHORTPS00061 Short-chain dehydrogenases/reductases family signature.DHB4_HUMAN151-179
 
 
 
 
 
  2-
-
C:151-179
D:151-179
-
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_SHORTPS00061 Short-chain dehydrogenases/reductases family signature.DHB4_HUMAN151-179
 
 
 
 
 
  2-
-
-
-
E:151-179
F:151-179

(-) Exons   (12, 72)

Asymmetric Unit (12, 72)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002562161aENSE00002062781chr5:118788138-118788328191DHB4_HUMAN1-20206A:3-20
B:3-20
C:3-20
D:3-20
E:3-20
F:3-20
18
18
18
18
18
18
1.2bENST000002562162bENSE00001715680chr5:118792010-11879206354DHB4_HUMAN20-38196A:20-38
B:20-38
C:20-38
D:20-38
E:20-38
F:20-38
19
19
19
19
19
19
1.4cENST000002562164cENSE00001645814chr5:118809603-118809710108DHB4_HUMAN38-74376A:38-74
B:38-74
C:38-74
D:38-74
E:38-74
F:38-74
37
37
37
37
37
37
1.5bENST000002562165bENSE00001703065chr5:118810096-11881015560DHB4_HUMAN74-94216A:74-94
B:74-94
C:74-94
D:74-94
E:74-94
F:74-94
21
21
21
21
21
21
1.6bENST000002562166bENSE00001607423chr5:118811401-11881142222DHB4_HUMAN94-10186A:94-101
B:94-101
C:94-101
D:94-101
E:94-101
F:94-101
8
8
8
8
8
8
1.7aENST000002562167aENSE00001705604chr5:118811519-11881156547DHB4_HUMAN101-117176A:101-117
B:101-117
C:101-117
D:101-117
E:101-117
F:101-117
17
17
17
17
17
17
1.10cENST0000025621610cENSE00001647277chr5:118813112-11881319685DHB4_HUMAN117-145296A:117-145
B:117-145
C:117-145
D:117-145
E:117-145
F:117-145
29
29
29
29
29
29
1.12fENST0000025621612fENSE00001790487chr5:118814529-118814716188DHB4_HUMAN145-208646A:145-208
B:145-208
C:145-208
D:145-208
E:145-208
F:145-208
64
64
64
64
64
64
1.13ENST0000025621613ENSE00000972272chr5:118824887-11882497892DHB4_HUMAN208-238316A:208-238
B:208-238
C:208-238
D:208-238
E:208-238
F:208-238
31
31
31
31
31
31
1.14ENST0000025621614ENSE00000998891chr5:118827795-11882781925DHB4_HUMAN239-24796A:239-247
B:239-247
C:239-247
D:239-247
E:239-247
F:239-247
9
9
9
9
9
9
1.15cENST0000025621615cENSE00001143969chr5:118829513-118829641129DHB4_HUMAN247-290446A:247-290
B:247-290
C:247-290
D:247-290
E:247-290
F:247-290
44
44
44
44
44
44
1.17cENST0000025621617cENSE00001143964chr5:118832238-118832341104DHB4_HUMAN290-324356A:290-304
B:290-304
C:290-304
D:290-304
E:290-304
F:290-304
15
15
15
15
15
15
1.18aENST0000025621618aENSE00001143958chr5:118835012-118835248237DHB4_HUMAN325-403790--
1.19bENST0000025621619bENSE00001143950chr5:118837736-11883778752DHB4_HUMAN404-421180--
1.20ENST0000025621620ENSE00001143943chr5:118842513-11884258472DHB4_HUMAN421-445250--
1.21ENST0000025621621ENSE00001143936chr5:118844836-118844939104DHB4_HUMAN445-479350--
1.23ENST0000025621623ENSE00001143927chr5:118850676-11885074166DHB4_HUMAN480-501220--
1.24aENST0000025621624aENSE00000972280chr5:118860911-11886098070DHB4_HUMAN502-525240--
1.25cENST0000025621625cENSE00000972281chr5:118861612-118861718107DHB4_HUMAN525-560360--
1.26aENST0000025621626aENSE00000972282chr5:118862828-11886291487DHB4_HUMAN561-589290--
1.27aENST0000025621627aENSE00000972283chr5:118865589-11886567587DHB4_HUMAN590-618290--
1.28ENST0000025621628ENSE00000972284chr5:118866961-118867099139DHB4_HUMAN619-665470--
1.29bENST0000025621629bENSE00000972285chr5:118872118-118872245128DHB4_HUMAN665-707430--
1.30iENST0000025621630iENSE00001833743chr5:118877600-118878028429DHB4_HUMAN708-736290--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:302
 aligned with DHB4_HUMAN | P51659 from UniProtKB/Swiss-Prot  Length:736

    Alignment length:302
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  
           DHB4_HUMAN     3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDS 304
               SCOP domains d1zbqa1 A:3-304 Peroxisomal multifunctional enzyme type 2                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1zbqA01 A:3-246 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                 ---------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeee............hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee...........hhhhhhhhhhhhhhhhhhhhh.........eeeee..eeeeeeeee...ee........hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------S-------------------------------------------------------------------------L---------------H---------------------------------N----------------------------------------------------------------------------C--------------------------------------------------------------------------S------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------P------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: A:151-179    ----------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a         -----------------Exon 1.4c  PDB: A:38-74              -------------------1.6b    ---------------Exon 1.10c  PDB: A:117-145   --------------------------------------------------------------Exon 1.13  PDB: A:208-238      Exon 1.14------------------------------------------Exon 1.17c      Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.2b          -----------------------------------Exon 1.5b            ------Exon 1.7a        ---------------------------Exon 1.12f  PDB: A:145-208 UniProt: 145-208                     --------------------------------------Exon 1.15c  PDB: A:247-290 UniProt: 247-290 -------------- Transcript 1 (2)
                 1zbq A   3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDS 304
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  

Chain B from PDB  Type:PROTEIN  Length:302
 aligned with DHB4_HUMAN | P51659 from UniProtKB/Swiss-Prot  Length:736

    Alignment length:302
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  
           DHB4_HUMAN     3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDS 304
               SCOP domains d1zbqb_ B: Peroxisomal multifunctional enzyme type 2                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1zbqB01 B:3-246 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                 ---------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeee............hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee...........hhhhhhhhhhhhhhhhhhhhh.........eeeee..eeeeeeeee...ee........hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------S-------------------------------------------------------------------------L---------------H---------------------------------N----------------------------------------------------------------------------C--------------------------------------------------------------------------S------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------P------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: B:151-179    ----------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a         -----------------Exon 1.4c  PDB: B:38-74              -------------------1.6b    ---------------Exon 1.10c  PDB: B:117-145   --------------------------------------------------------------Exon 1.13  PDB: B:208-238      Exon 1.14------------------------------------------Exon 1.17c      Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.2b          -----------------------------------Exon 1.5b            ------Exon 1.7a        ---------------------------Exon 1.12f  PDB: B:145-208 UniProt: 145-208                     --------------------------------------Exon 1.15c  PDB: B:247-290 UniProt: 247-290 -------------- Transcript 1 (2)
                 1zbq B   3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDS 304
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  

Chain C from PDB  Type:PROTEIN  Length:302
 aligned with DHB4_HUMAN | P51659 from UniProtKB/Swiss-Prot  Length:736

    Alignment length:302
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  
           DHB4_HUMAN     3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDS 304
               SCOP domains d1zbqc_ C: Peroxisomal multifunctional enzyme type 2                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1zbqC01 C:3-246 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                 ---------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeee............hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..........hhhhhhhhhhhhhhhhhhhhh.........eeeee..eeeeeeeee...ee........hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------S-------------------------------------------------------------------------L---------------H---------------------------------N----------------------------------------------------------------------------C--------------------------------------------------------------------------S------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------P------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: C:151-179    ----------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a         -----------------Exon 1.4c  PDB: C:38-74              -------------------1.6b    ---------------Exon 1.10c  PDB: C:117-145   --------------------------------------------------------------Exon 1.13  PDB: C:208-238      Exon 1.14------------------------------------------Exon 1.17c      Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.2b          -----------------------------------Exon 1.5b            ------Exon 1.7a        ---------------------------Exon 1.12f  PDB: C:145-208 UniProt: 145-208                     --------------------------------------Exon 1.15c  PDB: C:247-290 UniProt: 247-290 -------------- Transcript 1 (2)
                 1zbq C   3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDS 304
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  

Chain D from PDB  Type:PROTEIN  Length:302
 aligned with DHB4_HUMAN | P51659 from UniProtKB/Swiss-Prot  Length:736

    Alignment length:302
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  
           DHB4_HUMAN     3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDS 304
               SCOP domains d1zbqd_ D: Peroxisomal multifunctional enzyme type 2                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1zbqD01 D:3-246 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                 ---------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeee............hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..........hhhhhhhhhhhhhhhhhhhhh.........eeeee..eeeeeeeee...ee........hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------S-------------------------------------------------------------------------L---------------H---------------------------------N----------------------------------------------------------------------------C--------------------------------------------------------------------------S------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------P------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: D:151-179    ----------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a         -----------------Exon 1.4c  PDB: D:38-74              -------------------1.6b    ---------------Exon 1.10c  PDB: D:117-145   --------------------------------------------------------------Exon 1.13  PDB: D:208-238      Exon 1.14------------------------------------------Exon 1.17c      Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.2b          -----------------------------------Exon 1.5b            ------Exon 1.7a        ---------------------------Exon 1.12f  PDB: D:145-208 UniProt: 145-208                     --------------------------------------Exon 1.15c  PDB: D:247-290 UniProt: 247-290 -------------- Transcript 1 (2)
                 1zbq D   3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDS 304
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  

Chain E from PDB  Type:PROTEIN  Length:302
 aligned with DHB4_HUMAN | P51659 from UniProtKB/Swiss-Prot  Length:736

    Alignment length:302
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  
           DHB4_HUMAN     3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDS 304
               SCOP domains d1zbqe_ E: Peroxisomal multifunctional enzyme type 2                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1zbqE01 E:3-246 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                 ---------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeee............hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..........hhhhhhhhhhhhhhhhhhhhh.........eeeee..eeeeeeeee...ee........hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------S-------------------------------------------------------------------------L---------------H---------------------------------N----------------------------------------------------------------------------C--------------------------------------------------------------------------S------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------P------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: E:151-179    ----------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a         -----------------Exon 1.4c  PDB: E:38-74              -------------------1.6b    ---------------Exon 1.10c  PDB: E:117-145   --------------------------------------------------------------Exon 1.13  PDB: E:208-238      Exon 1.14------------------------------------------Exon 1.17c      Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.2b          -----------------------------------Exon 1.5b            ------Exon 1.7a        ---------------------------Exon 1.12f  PDB: E:145-208 UniProt: 145-208                     --------------------------------------Exon 1.15c  PDB: E:247-290 UniProt: 247-290 -------------- Transcript 1 (2)
                 1zbq E   3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDS 304
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  

Chain F from PDB  Type:PROTEIN  Length:302
 aligned with DHB4_HUMAN | P51659 from UniProtKB/Swiss-Prot  Length:736

    Alignment length:302
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  
           DHB4_HUMAN     3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDS 304
               SCOP domains d1zbqf_ F: Peroxisomal multifunctional enzyme type 2                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1zbqF01 F:3-246 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                 ---------------------------------------------------------- CATH domains
           Pfam domains (1) -------adh_short-1zbqF01 F:10-183                                                                                                                                                    ------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------adh_short-1zbqF02 F:10-183                                                                                                                                                    ------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -------adh_short-1zbqF03 F:10-183                                                                                                                                                    ------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -------adh_short-1zbqF04 F:10-183                                                                                                                                                    ------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) -------adh_short-1zbqF05 F:10-183                                                                                                                                                    ------------------------------------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) -------adh_short-1zbqF06 F:10-183                                                                                                                                                    ------------------------------------------------------------------------------------------------------------------------- Pfam domains (6)
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeee............hhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee...........hhhhhhhhhhhhhhhhhhhhh.........eeeee..eeeeeeeee...ee........hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------S-------------------------------------------------------------------------L---------------H---------------------------------N----------------------------------------------------------------------------C--------------------------------------------------------------------------S------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------P------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: F:151-179    ----------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a         -----------------Exon 1.4c  PDB: F:38-74              -------------------1.6b    ---------------Exon 1.10c  PDB: F:117-145   --------------------------------------------------------------Exon 1.13  PDB: F:208-238      Exon 1.14------------------------------------------Exon 1.17c      Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.2b          -----------------------------------Exon 1.5b            ------Exon 1.7a        ---------------------------Exon 1.12f  PDB: F:145-208 UniProt: 145-208                     --------------------------------------Exon 1.15c  PDB: F:247-290 UniProt: 247-290 -------------- Transcript 1 (2)
                 1zbq F   3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDS 304
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 6)

Asymmetric Unit

(-) Gene Ontology  (30, 30)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (DHB4_HUMAN | P51659)
molecular function
    GO:0044594    17-beta-hydroxysteroid dehydrogenase (NAD+) activity    Catalysis of the reaction: a 17-beta-hydroxysteroid + NAD+ = a 17-oxosteroid + NADH + H+.
    GO:0003857    3-hydroxyacyl-CoA dehydrogenase activity    Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD+ = 3-oxoacyl-CoA + NADH + H(+).
    GO:0033989    3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity    Catalysis of the reaction: (24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA = (24E)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA + H2O.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0016508    long-chain-enoyl-CoA hydratase activity    Catalysis of the reaction: a long-chain (3S)-3-hydroxyacyl-CoA = a long-chain trans-2-enoyl-CoA + H2O. A long-chain acyl-CoA is an acyl-CoA thioester where the acyl chain contains 13 to 22 carbon atoms.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0060009    Sertoli cell development    The process whose specific outcome is the progression of a Sertoli cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a Sertoli cell fate.
    GO:0036109    alpha-linolenic acid metabolic process    The chemical reactions and pathways involving alpha-linolenic acid, an unsaturated omega-6 fatty acid that has the molecular formula C18H32O2.
    GO:0008209    androgen metabolic process    The chemical reactions and pathways involving androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics.
    GO:0006699    bile acid biosynthetic process    The chemical reactions and pathways resulting in the formation of bile acids, any of a group of steroid carboxylic acids occurring in bile.
    GO:0008210    estrogen metabolic process    The chemical reactions and pathways involving estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants.
    GO:0006635    fatty acid beta-oxidation    A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).
    GO:0033540    fatty acid beta-oxidation using acyl-CoA oxidase    A fatty acid beta-oxidation pathway in which the initial step, which converts an acyl-CoA to a trans-2-enoyl-CoA, is catalyzed by acyl-CoA oxidase; the electrons removed by oxidation pass directly to oxygen and produce hydrogen peroxide, which is cleaved by peroxisomal catalases. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).
    GO:0006631    fatty acid metabolic process    The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0036112    medium-chain fatty-acyl-CoA metabolic process    The chemical reactions and pathways involving medium-chain fatty-acyl-CoAs, any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a long-chain fatty-acyl group. A medium-chain fatty acid is a fatty acid with a chain length of between C6 and C12.
    GO:0001649    osteoblast differentiation    The process whereby a relatively unspecialized cell acquires the specialized features of an osteoblast, a mesodermal or neural crest cell that gives rise to bone.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0000038    very long-chain fatty acid metabolic process    The chemical reactions and pathways involving a fatty acid which has a chain length greater than C22.
    GO:0036111    very long-chain fatty-acyl-CoA metabolic process    The chemical reactions and pathways involving very long-chain fatty-acyl-CoAs, any derivative of coenzyme A in which the sulfhydryl group is in a thioester linkage with a medium-chain fatty-acyl group. A very long-chain fatty acid is a fatty acid which has a chain length greater than C22.
cellular component
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005782    peroxisomal matrix    The volume contained within the membranes of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase.
    GO:0005778    peroxisomal membrane    The lipid bilayer surrounding a peroxisome.
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    NAD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1zbq)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1zbq
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  DHB4_HUMAN | P51659
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.1.1.35
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  233400
    Disease InformationOMIM
  261515
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  DHB4_HUMAN | P51659
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DHB4_HUMAN | P516591ikt 1s9c

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1ZBQ)