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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN VPA1032 FROM VIBRIO PARAHAEMOLYTICUS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET VPR44
 
Authors :  F. Forouhar, W. Yong, S. M. Vorobiev, M. Ciao, T. B. Acton, G. T. Montelio J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (N
Date :  08 Apr 05  (Deposition) - 19 Apr 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, A. Kuzin, J. Seetharaman, I. Lee, W. Zhou, M. Abashidze, Y. Chen, W. Yong, H. Janjua, Y. Fang, D. Wang, K. Cunningham, R. Xiao, T. B. Acton, E. Pichersky, D. F. Klessig, C. W. Porter, G. T. Montelione L. Tong
Functional Insights From Structural Genomics.
J. Struct. Funct. Genom. V. 8 37 2007
PubMed-ID: 17588214  |  Reference-DOI: 10.1007/S10969-007-9018-3

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN VPA1032
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BL21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PET21
    Organism Scientific: VIBRIO PARAHAEMOLYTICUS
    Organism Taxid: 223926
    Strain: RIMD 2210633

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1ZBP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZBP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZBP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZBP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZBP)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZBP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
 aligned with Q87HD3_VIBPA | Q87HD3 from UniProtKB/TrEMBL  Length:265

    Alignment length:266
                                                                                                                                                                                                                                                                                                 265  
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261   |  
         Q87HD3_VIBPA     2 TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDIDDRLGGYIELFSTAGNYFLVPIASINTLEIKSATSLLESVWRPVEFDIDGLGEGEGHMPMTYVDSESDAQKLGRETDWKQIADKEVYLGLGLKCWLVGEMALPISDLQNLQVIKELA--   -
               SCOP domains d1zbpa1 A:2-265 Hypothetical protein VPA1032                                                                                                                                                                                                                            -- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------ImpE-1zbpA01 A:138-260                                                                                                     ------- Pfam domains
         Sec.struct. author .hhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee..eee..eee.......eeeee.....eeeee...eeeeee.....hhhh.eeeeeeee...eeeeeeee.......hhhhhh...eeeee......eeeee..eeee..eeee.hhh.eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zbp A   2 TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLmQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSmVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDIDDRLGGYIELFSTAGNYFLVPIASINTLEIKSATSLLESVWRPVEFDIDGLGEGEGHmPmTYVDSESDAQKLGRETDWKQIADKEVYLGLGLKCWLVGEmALPISDLQNLQVIKELALE 267
                                    11        21        31        41        51   |    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201    | |211       221       231       241      |251       261      
                                                                                55-MSE                                                 111-MSE                                                                                        206-MSE                                   248-MSE               
                                                                                                                                                                                                                                        208-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZBP)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: ImpE] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1ZBP)

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 Related Entries

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