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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN BPP1347 FROM BORDETELLA PARAPERTUSSIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BOR27.
 
Authors :  F. Forouhar, W. Yong, K. Conover, T. B. Acton, G. T. Montelione, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  08 Apr 05  (Deposition) - 19 Apr 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, W. Yong, K. Conover, T. B. Acton, G. T. Montelione, L. Tong J. F. Hunt
Crystal Structure Of The Hypothetical Protein Bpp1347 From Bordetella Parapertussis, Northeast Structural Genomics Target Bor27.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN BPP1347
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BL21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PET21
    Fragment: BPP1347
    Organism Scientific: BORDETELLA PARAPERTUSSIS
    Organism Taxid: 257311
    Strain: 12822

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1ZBO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZBO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZBO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZBO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZBO)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZBO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:197
 aligned with Q7WAM7_BORPA | Q7WAM7 from UniProtKB/TrEMBL  Length:202

    Alignment length:197
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       
         Q7WAM7_BORPA     2 AEIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCGWVADRWAEMLSLPPADKARLLLLPPLDRLREIDAVLAA 198
               SCOP domains d1zboa1 A:2-198 Hypothetical protein BPP1347                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee........eeeeee....hhhhhhhhhhh...eeeee..................eeeeeeeeeee......eeeeeeeeeeeeeeeeee.hhh.eeeeeeee........hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zbo A   2 AEIPLFPLSNALFPAGVLRLRVFEIRYLDmVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTmARIDHWEAPmPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHImPmAAPFRLDDCGWVADRWAEmLSLPPADKARLLLLPPLDRLREIDAVLAA 198
                                    11        21        31        41        51        61      | 71      | 81        91       101       111       121       131       141      |151       161       171       181       191       
                                                        31-MSE                               68-MSE    78-MSE                                                               148-MSE              169-MSE                         
                                                                                                                                                                              150-MSE                                            


Chain B from PDB  Type:PROTEIN  Length:200
 aligned with Q7WAM7_BORPA | Q7WAM7 from UniProtKB/TrEMBL  Length:202

    Alignment length:200
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
         Q7WAM7_BORPA     2 AEIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCGWVADRWAEMLSLPPADKARLLLLPPLDRLREIDAVLAADGH 201
               SCOP domains d1zbob_ B: automated matches                                                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -LON-1zboB01 B:3-192                                                                                                                                                                           --------- Pfam domains (1)
           Pfam domains (2) -LON-1zboB02 B:3-192                                                                                                                                                                           --------- Pfam domains (2)
         Sec.struct. author .eeeeeee........ee..ee.hhhhhhhhhhhhhhh..eeeee...................eeeee...ee......eee.eeeeeee....eee.hhh.eeee..ee........hhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zbo B   2 AEIPLFPLSNALFPAGVLRLRVFEIRYLDmVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTmARIDHWEAPmPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHImPmAAPFRLDDCGWVADRWAEmLSLPPADKARLLLLPPLDRLREIDAVLAADGH 201
                                    11        21        31        41        51        61      | 71      | 81        91       101       111       121       131       141      |151       161       171       181       191       201
                                                        31-MSE                               68-MSE    78-MSE                                                               148-MSE              169-MSE                            
                                                                                                                                                                              150-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZBO)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: PUA (42)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q7WAM7_BORPA | Q7WAM7)
molecular function
    GO:0004176    ATP-dependent peptidase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds.
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

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