1ZB8 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF XYLELLA FASTIDIOSA ORGANIC PEROXIDE RESISTANCE PROTEIN

Authors :   M. A. Oliveira, B. G. Guimaraes, J. R. Cussiol, F. J. Medrano, S. A. Vidig F. C. Gozzo, L. E. Netto

Date :   07 Apr 05 (Deposition) - 02 May 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym./Biol. Unit : A,B

Keywords :   Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. A. Oliveira, B. G. Guimaraes, J. R. Cussiol, F. J. Medrano, F. C. Gozzo, L. E. Netto
Structural Insights Into Enzyme-Substrate Interaction And Characterization Of Enzymatic Intermediates Of Organic Hydroperoxide Resistance Protein From Xylella Fastidiosa.
J. Mol. Biol. V. 359 433 2006
PubMed-ID: 16631787 | Reference-DOI: 10.1016/J.JMB.2006.03.054

Molecule 1 - ORGANIC HYDROPEROXIDE RESISTANCE PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector	:	PET15B
	Expression System Vector Type	:	VECTOR
	Gene	:	OHR
	Organism Scientific	:	XYLELLA FASTIDIOSA
	Organism Taxid	:	160492
	Strain	:	9A5C

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 4)

No.	Name	Count	Type	Full Name
1	OCS	2	Mod. Amino Acid	CYSTEINESULFONIC ACID
2	PE4	2	Ligand/Ion	2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	OCS A:61 , PHE A:68 , PRO A:126 , HOH A:304 , HOH A:325 , ARG B:19 , PHE B:96	BINDING SITE FOR RESIDUE PE4 A 269
2	AC2	SOFTWARE	ARG A:19 , LEU A:40 , GLY A:95 , PHE A:96 , HOH A:301 , OCS B:61 , PHE B:68 , PRO B:126	BINDING SITE FOR RESIDUE PE4 A 270

(no "SS Bond" information available for 1ZB8)

(no "Cis Peptide Bond" information available for 1ZB8)

(no "SAP(SNP)/Variant" information available for 1ZB8)

(no "PROSITE Motif" information available for 1ZB8)

(no "Exon" information available for 1ZB8)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:141
 aligned with Q9PCF4_XYLFA | Q9PCF4 from UniProtKB/TrEMBL  Length:143

    Alignment length:141
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142 
         Q9PCF4_XYLFA     3 SLEKVLYTAIVTATGGRDGSVVSSDNVLNVKLSVPQGLGGPGGSGTNPEQLFAAGYSACFIGALKFVANKEKVDLPAEPRVEGRVGIGEIPGGFGLVVELRIAVSGMERSMLQTLVDKAHRVCPYSNATRGNIDVVLILID 143
               SCOP domains d1zb8a_ A: Organic hydroperoxide resistance protein Ohr                                                                                       SCOP domains
               CATH domains 1zb8A01 A:3-48                                1zb8A02 A:49-143  [code=3.30.300.20, no name defined]                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee....eeeee.....eeee..hhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeeeeeee..eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh....eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zb8 A   3 SLEKVLYTAIVTATGGRDGSVVSSDNVLNVKLSVPQGLGGPGGSGTNPEQLFAAGYSAcFIGALKFVANKEKVDLPAEPRVEGRVGIGEIPGGFGLVVELRIAVSGMERSMLQTLVDKAHRVCPYSNATRGNIDVVLILID 143
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142 
                                                                                     61-OCS

Chain B from PDB  Type:PROTEIN  Length:141
 aligned with Q9PCF4_XYLFA | Q9PCF4 from UniProtKB/TrEMBL  Length:143

    Alignment length:141
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142 
         Q9PCF4_XYLFA     3 SLEKVLYTAIVTATGGRDGSVVSSDNVLNVKLSVPQGLGGPGGSGTNPEQLFAAGYSACFIGALKFVANKEKVDLPAEPRVEGRVGIGEIPGGFGLVVELRIAVSGMERSMLQTLVDKAHRVCPYSNATRGNIDVVLILID 143
               SCOP domains d1zb8b_ B: Organic hydroperoxide resistance protein Ohr                                                                                       SCOP domains
               CATH domains 1zb8B01 B:3-48                                1zb8B02 B:49-143  [code=3.30.300.20, no name defined]                                           CATH domains
           Pfam domains (1) ---------------------------------------OsmC-1zb8B01 B:42-139                                                                             ---- Pfam domains (1)
           Pfam domains (2) ---------------------------------------OsmC-1zb8B02 B:42-139                                                                             ---- Pfam domains (2)
         Sec.struct. author ......eeeeeeee.....eeee.....eee...hhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh........eeeeeeeeeee..eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh....eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zb8 B   3 SLEKVLYTAIVTATGGRDGSVVSSDNVLNVKLSVPQGLGGPGGSGTNPEQLFAAGYSAcFIGALKFVANKEKVDLPAEPRVEGRVGIGEIPGGFGLVVELRIAVSGMERSMLQTLVDKAHRVCPYSNATRGNIDVVLILID 143
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142 
                                                                                     61-OCS

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: OsmC-like (20)

Superfamily: OsmC-like (20)

Family: Ohr/OsmC resistance proteins (13)

Protein domain: Organic hydroperoxide resistance protein Ohr (4)

Xylella fastidiosa [TaxId: 160492] (2)

1a	d1zb8a_	A:
1b	d1zb8b_	B:

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: OsmC] (11)

Family: OsmC (11)

Xylella fastidiosa (2)

1a	OsmC-1zb8B01	B:42-139
1b	OsmC-1zb8B02	B:42-139

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Q9PCF4_XYLFA | Q9PCF4)

biological process
	GO:0006979		response to oxidative stress		Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Asymmetric/Biological Unit
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	1zb8
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	Q9PCF4_XYLFA \| Q9PCF4	:	1zb9 4xx2

1zb9	THE XYLELLA FASTIDIOSA FULLY OXIDIZED STRUCTURE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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