1ZAK - JenaLib

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Title :   ADENYLATE KINASE FROM MAIZE IN COMPLEX WITH THE INHIBITOR P1,P5-BIS(ADENOSINE-5'-)PENTAPHOSPHATE (AP5A)

Authors :   K. Wild, G. E. Schulz

Date :   31 May 97 (Deposition) - 08 Apr 98 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.50

Chains :   Asym./Biol. Unit : A,B

Keywords :   Atp:Amp-Phosphotransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Wild, R. Grafmuller, E. Wagner, G. E. Schulz
Structure, Catalysis And Supramolecular Assembly Of Adenylate Kinase From Maize.
Eur. J. Biochem. V. 250 326 1997
PubMed-ID: 9428681 | Reference-DOI: 10.1111/J.1432-1033.1997.0326A.X
(for further references see the PDB file header)

Molecule 1 - ADENYLATE KINASE
	Cellular Location	:	CYTOPLASM
	Chains	:	A, B
	EC Number	:	2.7.4.3
	Organelle	:	CHLOROPLAST
	Organism Scientific	:	ZEA MAYS
	Organism Taxid	:	4577

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	AP5	2	Ligand/Ion	BIS(ADENOSINE)-5'-PENTAPHOSPHATE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO A:14 , ALA A:15 , SER A:16 , GLY A:17 , LYS A:18 , GLY A:19 , THR A:20 , ALA A:36 , GLY A:37 , LEU A:40 , ARG A:41 , MET A:58 , GLN A:62 , VAL A:64 , GLY A:91 , TYR A:92 , ARG A:94 , GLN A:98 , ARG A:125 , ARG A:129 , ILE A:138 , TYR A:139 , HIS A:140 , TYR A:143 , ARG A:158 , ARG A:169 , GLY A:193 , ALA A:195 , VAL A:197	BINDING SITE FOR RESIDUE AP5 A 223
2	AC2	SOFTWARE	PRO B:14 , ALA B:15 , SER B:16 , GLY B:17 , LYS B:18 , GLY B:19 , THR B:20 , ALA B:36 , GLY B:37 , LEU B:40 , ARG B:41 , MET B:58 , GLN B:62 , VAL B:64 , GLY B:91 , TYR B:92 , ARG B:94 , GLN B:98 , ARG B:125 , ARG B:129 , ILE B:138 , TYR B:139 , HIS B:140 , TYR B:143 , ARG B:158 , ARG B:169 , GLY B:193 , ALA B:195	BINDING SITE FOR RESIDUE AP5 B 223

(no "SS Bond" information available for 1ZAK)

Asymmetric/Biological Unit

No.	Residues
1	Tyr A:92	-	Pro A:93
2	Tyr B:92	-	Pro B:93

(no "SAP(SNP)/Variant" information available for 1ZAK)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADENYLATE_KINASE	PS00113	Adenylate kinase signature.	KADC_MAIZE	87-98	2	A:87-98 B:87-98

(no "Exon" information available for 1ZAK)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:220
 aligned with KADC_MAIZE | P43188 from UniProtKB/Swiss-Prot  Length:222

    Alignment length:220
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222
           KADC_MAIZE     3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSST 222
               SCOP domains d1zaka1 A:3-127,A:159-222 Adenylate kinase                                                                                   d1zaka2 A:128-158              d1zaka1 A:3-127,A:159-222 Adenylate kinase                       SCOP domains
               CATH domains 1zakA00 A:3-222 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....hhhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhh.hhhhh...eee.....hhhhhhhhhh.....eeeeee..hhhhhhhhhheee......eee.........hhhhh..........hhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ADENYLATE_KI---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zak A   3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSST 222
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222

Chain B from PDB  Type:PROTEIN  Length:220
 aligned with KADC_MAIZE | P43188 from UniProtKB/Swiss-Prot  Length:222

    Alignment length:220
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222
           KADC_MAIZE     3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSST 222
               SCOP domains d1zakb1 B:3-127,B:159-222 Adenylate kinase                                                                                   d1zakb2 B:128-158              d1zakb1 B:3-127,B:159-222 Adenylate kinase                       SCOP domains
               CATH domains 1zakB00 B:3-222 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                         CATH domains
           Pfam domains (1) -------ADK-1zakB01 B:10-189                                                                                                                                                                --------------------------------- Pfam domains (1)
           Pfam domains (2) -------ADK-1zakB02 B:10-189                                                                                                                                                                --------------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------------------------------------------ADK_lid-1zakB03 B:129-161        ------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------------------------------------------ADK_lid-1zakB04 B:129-161        ------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author .....eeeee.....hhhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhh.hhhhh...eee.....hhhhhhhhhh.....eeeeee..hhhhhhhhhheee......eee.........hhhhh..........hhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ADENYLATE_KI---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zak B   3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVSST 222
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)

Zea mays. Organism_taxid: 4577. (1)

1a	1zakA00	A:3-222
1b	1zakB00	B:3-222

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: P-loop_NTPase (1112)

Family: ADK (22)

Zea mays (Maize) (1)

1a	ADK-1zakB01	B:10-189
1b	ADK-1zakB02	B:10-189

Clan: no clan defined [family: ADK_lid] (10)

Family: ADK_lid (10)

Zea mays (Maize) (1)

2a	ADK_lid-1zakB03	B:129-161
2b	ADK_lid-1zakB04	B:129-161

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (KADC_MAIZE | P43188)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0004017	adenylate kinase activity	Catalysis of the reaction: ATP + AMP = 2 ADP.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0019205	nucleobase-containing compound kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016776	phosphotransferase activity, phosphate group as acceptor	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a phosphate group (acceptor).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006139	nucleobase-containing compound metabolic process	Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
	GO:0046939	nucleotide phosphorylation	The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Asymmetric/Biological Unit
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		Tyr A:92 - Pro A:93	[ RasMol ]
		Tyr B:92 - Pro B:93	[ RasMol ]

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