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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN CV1439 FROM CHROMOBACTERIUM VIOLACEUM. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET CVR12.
 
Authors :  A. Kuzin, S. M. Vorobiev, W. Yong, F. Forouhar, R. Xio, L. -C. Ma, T. Acton G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomic Consortium (Nesg)
Date :  31 Mar 05  (Deposition) - 10 May 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F  (2x)
Keywords :  Hypothetical Protein, Nesg, Cv1439, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kuzin, S. M. Vorobiev, W. Yong, F. Forouhar, R. Xio, L. -C. Ma, T. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Hypothetical Protein Cv1439 From Chromobacterium Violaceum. Northeast Structural Genomics Consortium Target Cvr12.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PET21
    Gene: CV1439
    Organism Scientific: CHROMOBACTERIUM VIOLACEUM
    Organism Taxid: 243365
    Strain: ATCC 12472

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCD  
Biological Unit 2 (2x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 13)

Asymmetric Unit (1, 13)
No.NameCountTypeFull Name
1MSE13Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 9)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1Z94)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Z94)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Mse B:1 -Pro B:2

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Z94)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Z94)

(-) Exons   (0, 0)

(no "Exon" information available for 1Z94)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
 aligned with Q7NY36_CHRVO | Q7NY36 from UniProtKB/TrEMBL  Length:147

    Alignment length:143
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141   
         Q7NY36_CHRVO     2 PNTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPGERIRYTDRFDDAGLPGDMITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEPD 144
               SCOP domains d1z94a1 A:2-144 Hypothetical protein CV1439                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhh.hhhhhhhhh....eeeeeeee......eeeeeeee.....eeeeeeeeeeee...eeeeeeee...---..eeeeeeeeee..eeeeeeeee......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z94 A   2 PNTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKmEFLAFASGQKHAFGGRYLELVPGERIRYTDRFDDA---GDmITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEPD 144
                                    11        21        31        41        51  |     61        71        81       | - | |   101       111       121       131       141   
                                                                               54-MSE                             89  93 |                                                 
                                                                                                                        95-MSE                                             


Chain B from PDB  Type:PROTEIN  Length:144
 aligned with Q7NY36_CHRVO | Q7NY36 from UniProtKB/TrEMBL  Length:147

    Alignment length:144
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140    
         Q7NY36_CHRVO     1 MPNTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPGERIRYTDRFDDAGLPGDMITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEPD 144
               SCOP domains d1z94b_ B: Hypothetical protein CV1439                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeeee......eeeeeeee.....eeeeeeeeeeee...eeeeeeee........eeeeeeeee....eeeeeeee......hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1z94 B   1 mPNTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKmEFLAFASGQKHAFGGRYLELVPGERIRYTDRFDDAGLPGDmITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEPD 144
                            |       10        20        30        40        50   |    60        70        80        90    |  100       110       120       130       140    
                            1-MSE                                               54-MSE                                   95-MSE                                             


Chain C from PDB  Type:PROTEIN  Length:143
 aligned with Q7NY36_CHRVO | Q7NY36 from UniProtKB/TrEMBL  Length:147

    Alignment length:143
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141   
         Q7NY36_CHRVO     2 PNTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPGERIRYTDRFDDAGLPGDMITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEPD 144
               SCOP domains d1z94c_ C: Hypothetical protein CV1439                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeeee......eeeeeeee.....eeeeeeeeeeee...eeeeeeee........eeeeeeeeee..eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z94 C   2 PNTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKmEFLAFASGQKHAFGGRYLELVPGERIRYTDRFDDAGLPGDmITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEPD 144
                                    11        21        31        41        51  |     61        71        81        91   |   101       111       121       131       141   
                                                                               54-MSE                                   95-MSE                                             


Chain D from PDB  Type:PROTEIN  Length:143
 aligned with Q7NY36_CHRVO | Q7NY36 from UniProtKB/TrEMBL  Length:147

    Alignment length:143
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141   
         Q7NY36_CHRVO     2 PNTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPGERIRYTDRFDDAGLPGDMITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEPD 144
               SCOP domains d1z94d_ D: Hypothetical protein CV1439                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..hhhhhhhhh.hhhhhhhhh....eeeeeeee......eeeeeeee.....eeeeeeeeeeee...eeeeeeee........eeeeeeeeee..eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z94 D   2 PNTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKmEFLAFASGQKHAFGGRYLELVPGERIRYTDRFDDAGLPGDmITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEPD 144
                                    11        21        31        41        51  |     61        71        81        91   |   101       111       121       131       141   
                                                                               54-MSE                                   95-MSE                                             


Chain E from PDB  Type:PROTEIN  Length:138
 aligned with Q7NY36_CHRVO | Q7NY36 from UniProtKB/TrEMBL  Length:147

    Alignment length:143
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141   
         Q7NY36_CHRVO     2 PNTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPGERIRYTDRFDDAGLPGDMITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEPD 144
               SCOP domains d1z94e_ E: Hypothetical protein CV1439                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeeee......eeeeeeee.....eeeeeeeeeeee...eeee.....-----...eeeeeeeee..eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z94 E   2 PNTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKmEFLAFASGQKHAFGGRYLELVPGERIRYTDRFD-----GDmITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEPD 144
                                    11        21        31        41        51  |     61        71        81     |   - | |   101       111       121       131       141   
                                                                               54-MSE                           87    93 |                                                 
                                                                                                                        95-MSE                                             


Chain F from PDB  Type:PROTEIN  Length:143
 aligned with Q7NY36_CHRVO | Q7NY36 from UniProtKB/TrEMBL  Length:147

    Alignment length:143
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141   
         Q7NY36_CHRVO     2 PNTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPGERIRYTDRFDDAGLPGDMITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEPD 144
               SCOP domains d1z94f_ F: Hypothetical protein CV1439                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------AHSA1-1z94F01 F:12-142                                                                                                             -- Pfam domains (1)
           Pfam domains (2) ----------AHSA1-1z94F02 F:12-142                                                                                                             -- Pfam domains (2)
           Pfam domains (3) ----------AHSA1-1z94F03 F:12-142                                                                                                             -- Pfam domains (3)
           Pfam domains (4) ----------AHSA1-1z94F04 F:12-142                                                                                                             -- Pfam domains (4)
           Pfam domains (5) ----------AHSA1-1z94F05 F:12-142                                                                                                             -- Pfam domains (5)
           Pfam domains (6) ----------AHSA1-1z94F06 F:12-142                                                                                                             -- Pfam domains (6)
         Sec.struct. author .eeeeeeeee..hhhhhhhhhhhhhhhhhhh....eeeeeeee......eeeeeeee.....eeeeeeeeeeee...eeeeeeee........eeeeeeeeee..eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z94 F   2 PNTIRLHRVLSAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKmEFLAFASGQKHAFGGRYLELVPGERIRYTDRFDDAGLPGDmITTITLAPLSCGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEPD 144
                                    11        21        31        41        51  |     61        71        81        91   |   101       111       121       131       141   
                                                                               54-MSE                                   95-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Z94)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: Bet_V_1_like (93)
(-)
Family: AHSA1 (21)
(-)
Chromobacterium violaceum (1)
1aAHSA1-1z94F01F:12-142
1bAHSA1-1z94F02F:12-142
1cAHSA1-1z94F03F:12-142
1dAHSA1-1z94F04F:12-142
1eAHSA1-1z94F05F:12-142
1fAHSA1-1z94F06F:12-142

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q7NY36_CHRVO | Q7NY36)
biological process
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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  1z94
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