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(-) Description

Title :  CRYSTAL STRUCTURE OF A GDSL-LIKE LIPASE (ALR1529) FROM NOSTOC SP. PCC 7120 AT 2.02 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  11 Apr 05  (Deposition) - 19 Apr 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.02
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Putative Lipase From The G-D-S-L Family, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Lipase From The G-D-S-L Famil (17135349) From Nostoc Sp. Pcc 7120 At 2. 02 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE LIPASE FROM THE G-D-S-L FAMILY
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ALR1529
    Organism Scientific: NOSTOC SP.
    Organism Taxid: 103690
    Strain: PCC 7120

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1IPA3Ligand/IonISOPROPYL ALCOHOL
2MSE4Mod. Amino AcidSELENOMETHIONINE
3UNL4Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1IPA2Ligand/IonISOPROPYL ALCOHOL
2MSE2Mod. Amino AcidSELENOMETHIONINE
3UNL2Ligand/IonUNKNOWN LIGAND
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
1IPA1Ligand/IonISOPROPYL ALCOHOL
2MSE2Mod. Amino AcidSELENOMETHIONINE
3UNL2Ligand/IonUNKNOWN LIGAND

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:16 , SER A:17 , ARG A:53 , ARG A:54 , ASN A:87 , HIS A:182 , HOH A:319 , HOH A:383BINDING SITE FOR RESIDUE UNL A 301
2AC2SOFTWAREASP B:16 , SER B:17 , ARG B:53 , ARG B:54 , ASN B:87 , HIS B:182 , HOH B:323 , HOH B:384BINDING SITE FOR RESIDUE UNL B 301
3AC3SOFTWAREASP C:16 , SER C:17 , ARG C:54 , ASN C:87 , HIS C:182 , HOH C:319 , HOH C:395BINDING SITE FOR RESIDUE UNL C 301
4AC4SOFTWAREASP D:16 , SER D:17 , ARG D:54 , ASN D:87 , HIS D:182 , HOH D:307 , HOH D:338BINDING SITE FOR RESIDUE UNL D 301
5AC5SOFTWAREALA A:38 , LEU A:79 , TRP A:201 , TRP A:204 , HOH A:409BINDING SITE FOR RESIDUE IPA A 302
6AC6SOFTWAREARG C:33 , THR C:189 , GLU C:196 , HOH C:371 , HOH C:463BINDING SITE FOR RESIDUE IPA C 302
7AC7SOFTWARETHR A:189 , GLU A:196 , HOH A:387 , HOH A:452 , HOH A:565BINDING SITE FOR RESIDUE IPA A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Z8H)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys A:167 -Pro A:168
2Lys B:167 -Pro B:168
3Lys C:167 -Pro C:168
4Lys D:167 -Pro D:168

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Z8H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Z8H)

(-) Exons   (0, 0)

(no "Exon" information available for 1Z8H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:202
 aligned with Q8YWS4_NOSS1 | Q8YWS4 from UniProtKB/TrEMBL  Length:206

    Alignment length:202
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204  
         Q8YWS4_NOSS1     5 SKTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVENWDAWLNWFR 206
               SCOP domains d1z8ha_ A: Hypothetical protein alr1529                                                                                                                                                                    SCOP domains
               CATH domains 1z8hA00 A:5-206  [code=3.40.50.1110, no name defined]                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeehhhhhh......hhhhhhhhhhhhhh.eeeeeeeee....hhhhhhhhhhhhhhh.......eeeeee.hhhhhhee..ee..hhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhhhhhhhhhhh..ee.hhhhhh...hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z8h A   5 SKTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVLmISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVENWDAWLNWFR 206
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204  
                                                                                                                                               122-MSE                                                                                


Chain B from PDB  Type:PROTEIN  Length:199
 aligned with Q8YWS4_NOSS1 | Q8YWS4 from UniProtKB/TrEMBL  Length:206

    Alignment length:199
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196         
         Q8YWS4_NOSS1     7 TQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVENWDAWLNWF 205
               SCOP domains d1z8hb_ B: Hypothetical protein alr1529                                                                                                                                                                 SCOP domains
               CATH domains 1z8hB00 B:7-205  [code=3.40.50.1110, no name defined]                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhh......hhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhhhh....eeeeee.hhhhh.ee..ee..hhhhhhhhhhhhhhhhhhhh.eeee...........hhhhhhhhhhhhhhhhhhhh...ee.hhhhhh...hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z8h B   7 TQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVLmISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVENWDAWLNWF 205
                                    16        26        36        46        56        66        76        86        96       106       116     | 126       136       146       156       166       176       186       196         
                                                                                                                                             122-MSE                                                                               


Chain C from PDB  Type:PROTEIN  Length:200
 aligned with Q8YWS4_NOSS1 | Q8YWS4 from UniProtKB/TrEMBL  Length:206

    Alignment length:200
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205
         Q8YWS4_NOSS1     6 KTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVENWDAWLNWF 205
               SCOP domains d1z8hc_ C: Hypothetical protein alr1529                                                                                                                                                                  SCOP domains
               CATH domains 1z8hC00 C:6-205  [code=3.40.50.1110, no name defined]                                                                                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeehhhhhh......hhhhhhhhhhhhhh.eeeeeeeee....hhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhee..ee..hhhhhhhhhhhhhhhhhhhh.eeee...........hhhhhhhhhhhhhhhhhhhhh..ee.hhhhhh..hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z8h C   6 KTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVLmISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVENWDAWLNWF 205
                                    15        25        35        45        55        65        75        85        95       105       115      |125       135       145       155       165       175       185       195       205
                                                                                                                                              122-MSE                                                                               


Chain D from PDB  Type:PROTEIN  Length:201
 aligned with Q8YWS4_NOSS1 | Q8YWS4 from UniProtKB/TrEMBL  Length:206

    Alignment length:201
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205 
         Q8YWS4_NOSS1     6 KTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVLMISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVENWDAWLNWFR 206
               SCOP domains d1z8hd_ D: Hypothetical protein alr1529                                                                                                                                                                   SCOP domains
               CATH domains 1z8hD00 D:6-206  [code=3.40.50.1110, no name defined]                                                                                                                                                     CATH domains
           Pfam domains (1) ------Lipase_GDSL_2-1z8hD01 D:12-191                                                                                                                                                      --------------- Pfam domains (1)
           Pfam domains (2) ------Lipase_GDSL_2-1z8hD02 D:12-191                                                                                                                                                      --------------- Pfam domains (2)
           Pfam domains (3) ------Lipase_GDSL_2-1z8hD03 D:12-191                                                                                                                                                      --------------- Pfam domains (3)
           Pfam domains (4) ------Lipase_GDSL_2-1z8hD04 D:12-191                                                                                                                                                      --------------- Pfam domains (4)
         Sec.struct. author ....eeeeeehhhhhh......hhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhhh.....eeeeee..hhhh.ee..ee..hhhhhhhhhhhhhhhhhhhh.eeee...........hhhhhhhhhhhhhhhhhhhhh..ee.hhhhhh...hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z8h D   6 KTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTLENGKPRVSIAETIKNTREILTQAKKLYPVLmISPAPYIEQQDPGRRRRTIDLSQQLALVCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVENWDAWLNWFR 206
                                    15        25        35        45        55        65        75        85        95       105       115      |125       135       145       155       165       175       185       195       205 
                                                                                                                                              122-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: SGNH_hydrolase (17)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1Z8H)

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  1z8h
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8YWS4_NOSS1 | Q8YWS4: 1vjg

(-) Related Entries Specified in the PDB File

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