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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN MUSCLE GLYCOGEN PHOSPHORYLASE A WITH AMP AND GLUCOSE
 
Authors :  C. M. Lukacs, N. G. Oikonomakos, R. L. Crowther, L. N. Hong, R. U. Kammlot W. Levin, S. Li, C. M. Liu, D. Lucas-Mcgady, S. Pietranico, L. Reik
Date :  30 Mar 05  (Deposition) - 21 Mar 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. M. Lukacs, N. G. Oikonomakos, R. L. Crowther, L. N. Hong, R. U. Kammlott, W. Levin, S. Li, C. M. Liu, D. Lucas-Mcgady, S. Pietranico, L. Reik
The Crystal Structure Of Human Muscle Glycogen Phosphorylas A With Bound Glucose And Amp: An Intermediate Conformation With T-State And R-State Features.
Proteins V. 63 1123 2006
PubMed-ID: 16523484  |  Reference-DOI: 10.1002/PROT.20939

(-) Compounds

Molecule 1 - GLYCOGEN PHOSPHORYLASE, MUSCLE FORM
    ChainsA
    EC Number2.4.1.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidPFASTBAC
    Expression System StrainSF9
    Expression System Taxid7108
    Expression System Vector TypeVIRUS
    GenePYGM
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMYOPHOSPHORYLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric Unit (5, 5)
No.NameCountTypeFull Name
1ADE1Ligand/IonADENINE
2AMP1Ligand/IonADENOSINE MONOPHOSPHATE
3GLC1Ligand/IonALPHA-D-GLUCOSE
4LLP1Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (5, 10)
No.NameCountTypeFull Name
1ADE2Ligand/IonADENINE
2AMP2Ligand/IonADENOSINE MONOPHOSPHATE
3GLC2Ligand/IonALPHA-D-GLUCOSE
4LLP2Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5SEP2Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:136 , LEU A:139 , ASN A:284 , HIS A:377 , VAL A:455 , ASN A:484 , TYR A:573 , GLU A:672 , ALA A:673 , SER A:674 , GLY A:675 , HOH A:1043 , HOH A:1053 , HOH A:1093BINDING SITE FOR RESIDUE GLC A 901
2AC2SOFTWAREASP A:42 , ASN A:44 , TRP A:67 , GLN A:71 , TYR A:75 , ARG A:309 , ARG A:310 , LYS A:315 , PHE A:316 , GLY A:317 , CYS A:318 , HOH A:950 , HOH A:951 , HOH A:953BINDING SITE FOR RESIDUE AMP A 900
3AC3SOFTWAREPHE A:285 , ALA A:610 , GLY A:612 , TYR A:613BINDING SITE FOR RESIDUE ADE A 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Z8D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Z8D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (18, 18)

Asymmetric Unit (18, 18)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_014002L116PPYGM_HUMANDisease (GSD5)776680924AL115P
02UniProtVAR_014003R194WPYGM_HUMANDisease (GSD5)376581557AR193W
03UniProtVAR_003431G205SPYGM_HUMANDisease (GSD5)119103251AG204S
04UniProtVAR_014004L292PPYGM_HUMANDisease (GSD5)780375860AL291P
05UniProtVAR_014005E349KPYGM_HUMANDisease (GSD5)  ---AE348K
06UniProtVAR_003432L397PPYGM_HUMANDisease (GSD5)  ---AL396P
07UniProtVAR_061198R414GPYGM_HUMANPolymorphism11231866AR413G
08UniProtVAR_014006T488NPYGM_HUMANDisease (GSD5)  ---AT487N
09UniProtVAR_003433K543TPYGM_HUMANDisease (GSD5)119103252AK542T
10UniProtVAR_014007R602WPYGM_HUMANDisease (GSD5)750195683AR601W
11UniProtVAR_003434E655KPYGM_HUMANDisease (GSD5)119103253AE654K
12UniProtVAR_014008A660DPYGM_HUMANDisease (GSD5)  ---AA659D
13UniProtVAR_014009Q666EPYGM_HUMANDisease (GSD5)119103256AQ665E
14UniProtVAR_014010N685YPYGM_HUMANDisease (GSD5)  ---AN684Y
15UniProtVAR_014011G686RPYGM_HUMANDisease (GSD5)144081869AG685R
16UniProtVAR_014012A687PPYGM_HUMANDisease (GSD5)  ---AA686P
17UniProtVAR_014013A704VPYGM_HUMANDisease (GSD5)  ---AA703V
18UniProtVAR_014015W798RPYGM_HUMANDisease (GSD5)119103258AW797R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (18, 36)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_014002L116PPYGM_HUMANDisease (GSD5)776680924AL115P
02UniProtVAR_014003R194WPYGM_HUMANDisease (GSD5)376581557AR193W
03UniProtVAR_003431G205SPYGM_HUMANDisease (GSD5)119103251AG204S
04UniProtVAR_014004L292PPYGM_HUMANDisease (GSD5)780375860AL291P
05UniProtVAR_014005E349KPYGM_HUMANDisease (GSD5)  ---AE348K
06UniProtVAR_003432L397PPYGM_HUMANDisease (GSD5)  ---AL396P
07UniProtVAR_061198R414GPYGM_HUMANPolymorphism11231866AR413G
08UniProtVAR_014006T488NPYGM_HUMANDisease (GSD5)  ---AT487N
09UniProtVAR_003433K543TPYGM_HUMANDisease (GSD5)119103252AK542T
10UniProtVAR_014007R602WPYGM_HUMANDisease (GSD5)750195683AR601W
11UniProtVAR_003434E655KPYGM_HUMANDisease (GSD5)119103253AE654K
12UniProtVAR_014008A660DPYGM_HUMANDisease (GSD5)  ---AA659D
13UniProtVAR_014009Q666EPYGM_HUMANDisease (GSD5)119103256AQ665E
14UniProtVAR_014010N685YPYGM_HUMANDisease (GSD5)  ---AN684Y
15UniProtVAR_014011G686RPYGM_HUMANDisease (GSD5)144081869AG685R
16UniProtVAR_014012A687PPYGM_HUMANDisease (GSD5)  ---AA686P
17UniProtVAR_014013A704VPYGM_HUMANDisease (GSD5)  ---AA703V
18UniProtVAR_014015W798RPYGM_HUMANDisease (GSD5)119103258AW797R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHOSPHORYLASEPS00102 Phosphorylase pyridoxal-phosphate attachment site.PYGM_HUMAN673-685  1A:672-684
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PHOSPHORYLASEPS00102 Phosphorylase pyridoxal-phosphate attachment site.PYGM_HUMAN673-685  2A:672-684

(-) Exons   (20, 20)

Asymmetric Unit (20, 20)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000001641391aENSE00001120049chr11:64527769-64527128642PYGM_HUMAN1-81811A:2-80 (gaps)79
1.2ENST000001641392ENSE00001171792chr11:64526176-64526075102PYGM_HUMAN82-115341A:81-11434
1.3ENST000001641393ENSE00001171784chr11:64525987-6452590979PYGM_HUMAN116-142271A:115-14127
1.4aENST000001641394aENSE00001171774chr11:64525821-64525718104PYGM_HUMAN142-176351A:141-17535
1.5ENST000001641395ENSE00000863658chr11:64525382-64525251132PYGM_HUMAN177-220441A:176-21944
1.6ENST000001641396ENSE00001621025chr11:64523030-64522919112PYGM_HUMAN221-258381A:220-24930
1.7bENST000001641397bENSE00001767104chr11:64522827-6452274583PYGM_HUMAN258-285281A:261-28424
1.8ENST000001641398ENSE00000863655chr11:64522308-64522165144PYGM_HUMAN286-333481A:285-33248
1.9bENST000001641399bENSE00000730810chr11:64521817-6452172593PYGM_HUMAN334-364311A:333-36331
1.10ENST0000016413910ENSE00000863653chr11:64521497-64521351147PYGM_HUMAN365-413491A:364-41249
1.11bENST0000016413911bENSE00000730806chr11:64521154-64520991164PYGM_HUMAN414-468551A:413-46755
1.12ENST0000016413912ENSE00000863651chr11:64520659-64520545115PYGM_HUMAN468-506391A:467-50539
1.13ENST0000016413913ENSE00000863650chr11:64519976-64519875102PYGM_HUMAN507-540341A:506-53934
1.14aENST0000016413914aENSE00001722365chr11:64519543-64519396148PYGM_HUMAN541-590501A:540-58950
1.15ENST0000016413915ENSE00000730796chr11:64519127-6451906959PYGM_HUMAN590-609201A:589-60820
1.16aENST0000016413916aENSE00000730794chr11:64518938-64518797142PYGM_HUMAN610-657481A:609-65648
1.17ENST0000016413917ENSE00000730792chr11:64518055-64517848208PYGM_HUMAN657-726701A:656-72570
1.18bENST0000016413918bENSE00000730789chr11:64514830-64514696135PYGM_HUMAN726-771461A:725-77046
1.19ENST0000016413919ENSE00001171666chr11:64514459-6451439367PYGM_HUMAN771-793231A:770-79223
1.20bENST0000016413920bENSE00001954096chr11:64514280-64513861420PYGM_HUMAN794-842491A:793-83644

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:821
 aligned with PYGM_HUMAN | P11217 from UniProtKB/Swiss-Prot  Length:842

    Alignment length:835
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832     
           PYGM_HUMAN     3 RPLSDQEKRKQISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGHVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRILVDLERMDWDKAWDVTVRTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEVIAERIGEDFISDLDQLRKLLSFVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDIQVKRIHEYKRQLLNCLHVITLYNRIKREPNKFFVPRTVMIGGKAAPGYHMAKMIIRLVTAIGDVVNHDPAVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDKLDQRGYNAQEYYDRIPELRQVIEQLSSGFFSPKQPDLFKDIVNMLMHHDRFKVFADYEDYIKCQEKVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPA 837
               SCOP domains d1z8da_ A: autom   ated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains --------1z8dA01    A:10-485,A:813-832 Glycogen Phosphorylase B;                                                                                                                                                                                                                                                                                                                                                                                                                                     1z8dA02 A:486-812 Glycogen Phosphorylase B;                                                                                                                                                                                                                                                                                            1z8dA01             ---- CATH domains
               Pfam domains ----------------   ------------------------------------------------------------------------------------------Phosphorylase-1z8dA01 A:111-829                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ------- Pfam domains
         Sec.struct. author ...hhhhhhhhh....---..hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee...ee...hhhhhhhhh.hhhhhhhhhhh...hhhhhhhhh...ee..hhhhhhhhhhhhhhhhh...eeeeee.......eeeee..eeeee............ee.hhhheeeee..eeeee..eeeee..eeeeeeeeeeeee......eeeeeeeeee..-----------hhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhheeeeee.....hhhhhhhhhhhhh...hhhhhhhhhhhheeee..........eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.ee.....eeehhhhhhhh..eeee.hhhhhhhhhhh.hhhhhhhh...eee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee.......hhhhhhhhhhhhhhhhhhh.......eeeeee......hhhhhhhhhhhhhhhhhhh....hhh.eeeeee...hhhhhhhhhhhh.eeee..........hhhhhhhhh..eeee....hhhhhhhhhhhhhhee...hhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhh.........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------P-----------------------------------------------------------------------------W----------S--------------------------------------------------------------------------------------P--------------------------------------------------------K-----------------------------------------------P----------------G-------------------------------------------------------------------------N------------------------------------------------------T----------------------------------------------------------W----------------------------------------------------K----D-----E------------------YRP----------------V---------------------------------------------------------------------------------------------R--------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHOSPHORYLASE-------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:2-80 (gaps) UniProt: 1-81 [INCOMPLETE]                       Exon 1.2  PDB: A:81-114           Exon 1.3  PDB: A:115-141   ----------------------------------Exon 1.5  PDB: A:176-219 UniProt: 177-220   Exon 1.6  PDB: A:220-249 [INCOMPLETE] ---------------------------Exon 1.8  PDB: A:285-332 UniProt: 286-333       Exon 1.9b  PDB: A:333-363      Exon 1.10  PDB: A:364-412 UniProt: 365-413       Exon 1.11b  PDB: A:413-467 UniProt: 414-468            --------------------------------------Exon 1.13  PDB: A:506-539         Exon 1.14a  PDB: A:540-589 UniProt: 541-590       -------------------Exon 1.16a  PDB: A:609-656 UniProt: 610-657     --------------------------------------------------------------------Exon 1.18b  PDB: A:725-770 UniProt: 726-771   ----------------------Exon 1.20b  PDB: A:793-836 UniProt: 794-842  Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------------------------------------Exon 1.4a  PDB: A:141-175          ---------------------------------------------------------------------------------Exon 1.7b  PDB: A:261-284   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12  PDB: A:467-505              -----------------------------------------------------------------------------------Exon 1.15           -----------------------------------------------Exon 1.17  PDB: A:656-725 UniProt: 657-726                            --------------------------------------------Exon 1.19              -------------------------------------------- Transcript 1 (2)
                 1z8d A   2 RPLSDQEKRKQIsVRG---VENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGHVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-----------GYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRILVDLERMDWDKAWDVTVRTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEVIAERIGEDFISDLDQLRKLLSFVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDIQVKRIHEYKRQLLNCLHVITLYNRIKREPNKFFVPRTVMIGGKAAPGYHMAKMIIRLVTAIGDVVNHDPAVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMkFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDKLDQRGYNAQEYYDRIPELRQVIEQLSSGFFSPKQPDLFKDIVNMLMHHDRFKVFADYEDYIKCQEKVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLPA 836
                                    11  |  |  21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       | -       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831     
                                       14-SEP 21                                                                                                                                                                                                                                 249         261                                                                                                                                                                                                                                                                                                                                                                                                                                680-LLP                                                                                                                                                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: GT-B (132)

(-) Gene Ontology  (23, 23)

Asymmetric Unit(hide GO term definitions)
Chain A   (PYGM_HUMAN | P11217)
molecular function
    GO:0016208    AMP binding    Interacting selectively and non-covalently with AMP, adenosine monophosphate.
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0008144    drug binding    Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
    GO:0008184    glycogen phosphorylase activity    Catalysis of the reaction: glycogen + phosphate = maltodextrin + alpha-D-glucose 1-phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004645    phosphorylase activity    Catalysis of the reaction: 1,4-alpha-D-glucosyl(n) + phosphate = 1,4-alpha-D-glucosyl(n-1) + alpha-D-glucose 1-phosphate. The name should be qualified in each instance by adding the name of the natural substrate, e.g. maltodextrin phosphorylase, starch phosphorylase, glycogen phosphorylase.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0030170    pyridoxal phosphate binding    Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0006874    cellular calcium ion homeostasis    Any process involved in the maintenance of an internal steady state of calcium ions at the level of a cell.
    GO:0005980    glycogen catabolic process    The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
    GO:0005977    glycogen metabolic process    The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha-(1->4) glycosidic linkage, joined together by alpha-(1->6) glycosidic linkages.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0051591    response to cAMP    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.
    GO:0001666    response to hypoxia    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
    GO:0010033    response to organic substance    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0016529    sarcoplasmic reticulum    A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle cell; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage.

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1fa9 2gpa 3amv 7gpb