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(-) Description

Title :  DUAL ROLES OF GLYCOSYL TORSION ANGLE CONFORMATION AND STEREOCHEMICAL CONFIGURATION IN BUTADIENE OXIDE-DERIVED N1 B-HYDROXYALKYL DEOXYINOSINE ADDUCTS: A STRUCTURAL PERSPECTIVE
 
Authors :  W. K. Merritt, A. Kowalczyk, T. A. Scholdberg, S. M. Dean, T. M. Harris, C. M. Harris, R. S. Lloyd, M. P. Stone
Date :  28 Mar 05  (Deposition) - 02 Aug 05  (Release) - 02 Aug 05  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B
Keywords :  Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. K. Merritt, A. Kowalczyk, T. A. Scholdberg, S. M. Dean, T. M. Harris, C. M. Harris, R. S. Lloyd, M. P. Stone
Dual Roles Of Glycosyl Torsion Angle Conformation And Stereochemical Configuration In Butadiene Oxide-Derived N1 Beta-Hydroxyalkyl Deoxyinosine Adducts: A Structural Perspective.
Chem. Res. Toxicol. V. 18 1098 2005
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*GP*AP*CP*(2BD)P*AP*GP*AP*AP*G)-3'
    Chains: A
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3'
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Theoretical Model (1, 1)
No.NameCountTypeFull Name
12BD1Mod. NucleotideN1-(1-HYDROXY-3-BUTEN-2(S)-YL)-2'-DEOXYINOSINE MONOPHOSPHORIC ACID

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:11
                                          
                  1z7v A  1 CGGACxAGAAG 11
                                 |  10 
                                 6-2BD 


Chain B from PDB  Type:DNA  Length:11
                                          
                  1z7v B 12 CTTCTTGTCCG 22
                                    21
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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  1z7v
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