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(-) Description

Title :  STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REGULATOR FROM STREPTOCOCCUS PNEUMONIAE
 
Authors :  M. E. Cuff, M. Zhou, J. Abdullah, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date :  23 Mar 05  (Deposition) - 17 May 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Streptococcus Pneumoniae, Transcriptional Regulator, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, M. Zhou, A. Joachimiak
Structure Of A Putative Transcriptional Regulator From Streptococcus Pneumoniae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, PUTATIVE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: SP0716
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 170187
    Strain: TIGR4

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1ACY3Ligand/IonACETIC ACID
2MG1Ligand/IonMAGNESIUM ION
3MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:207 , PHE B:38 , ALA B:158 , HOH B:1153 , HOH B:1154BINDING SITE FOR RESIDUE MG B 804
2AC2SOFTWAREASP A:54 , PHE A:57 , TYR A:149 , GLU A:212 , PHE A:215 , HOH A:880 , HOH A:915BINDING SITE FOR RESIDUE ACY A 801
3AC3SOFTWAREASP B:54 , PHE B:57 , TYR B:149 , GLU B:212 , PHE B:215 , HOH B:863 , HOH B:928BINDING SITE FOR RESIDUE ACY B 802
4AC4SOFTWAREASN B:170 , ARG B:173 , HOH B:808 , HOH B:998 , HOH B:1078 , HOH B:1163BINDING SITE FOR RESIDUE ACY B 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Z72)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Z72)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Z72)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Z72)

(-) Exons   (0, 0)

(no "Exon" information available for 1Z72)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:216
 aligned with A0A0H2UP67_S | A0A0H2UP67 from UniProtKB/TrEMBL  Length:222

    Alignment length:217
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       
         A0A0H2UP67_S     4 QDYAFQPGLTVGELLKSSQKDWQAAINHRFVKELFAGTIENKVLKDYLIQDYHFFDAFLSMLGACVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKELKVAENDYLEVTLHPVTKAFQDLMYSAVASSDYAHLLVMLVIAEGLYLDWGSKDLALPEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGKNREDLTELQQRWNQAVALELAFFDIGY 220
               SCOP domains d1z72a_ A: automated matches                                                                                                                                                                                              SCOP domains
               CATH domains 1z72A00 A:4-220 Heme Oxygenase; Chain A                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh-..hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z72 A   4 QDYAFQPGLTVGELLKSSQKDWQAAINHRFVKELFAGTIENKVLKDYLIQDYHFFDAFLSmLGACVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKELKVAENDYLEVTLHPVTKAFQDLmYSAVASSDYAHLLVmLVIAEGLYLDWGSKDLALPEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGK-REDLTELQQRWNQAVALELAFFDIGY 220
                                    13        23        33        43        53        63|       73        83        93       103       113       123  |    133       143       153       163       173       183       193 |     203       213       
                                                                                       64-MSE                                                       126-MSE        141-MSE                                             193 |                         
                                                                                                                                                                                                                         195                         


Chain B from PDB  Type:PROTEIN  Length:215
 aligned with A0A0H2UP67_S | A0A0H2UP67 from UniProtKB/TrEMBL  Length:222

    Alignment length:218
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212        
         A0A0H2UP67_S     3 TQDYAFQPGLTVGELLKSSQKDWQAAINHRFVKELFAGTIENKVLKDYLIQDYHFFDAFLSMLGACVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKELKVAENDYLEVTLHPVTKAFQDLMYSAVASSDYAHLLVMLVIAEGLYLDWGSKDLALPEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGKNREDLTELQQRWNQAVALELAFFDIGY 220
               SCOP domains d1z72b_ B: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains 1z72B00 B:3-220 Heme Oxygenase; Chain A                                                                                                                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh-.--hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z72 B   3 TQDYAFQPGLTVGELLKSSQKDWQAAINHRFVKELFAGTIENKVLKDYLIQDYHFFDAFLSmLGACVAHADKLESKLRFAKQLGFLEADEDGYFQKAFKELKVAENDYLEVTLHPVTKAFQDLmYSAVASSDYAHLLVmLVIAEGLYLDWGSKDLALPEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGK-R--LTELQQRWNQAVALELAFFDIGY 220
                                    12        22        32        42        52        62 |      72        82        92       102       112       122   |   132       142       152       162       172       182       192| |  | 202       212        
                                                                                        64-MSE                                                       126-MSE        141-MSE                                             193 |  |                      
                                                                                                                                                                                                                          195  |                      
                                                                                                                                                                                                                             198
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1Z72)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1Z72)

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  Cis Peptide Bonds
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  1z72
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  A0A0H2UP67_S | A0A0H2UP67
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