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(-) Description

Title :  MOUSE DOPPEL 1-30 PEPTIDE
 
Authors :  E. Papadopoulos
Date :  21 Mar 05  (Deposition) - 07 Feb 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (22x)
Keywords :  Transmembrane Helix; Dhpc; Mouse Doppel, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Papadopoulos, K. Oglecka, L. Maler, J. Jarvet, P. E. Wright, H. J. Dyson, A. Graslund
Nmr Solution Structure Of The Peptide Fragment 1-30, Derived From Unprocessed Mouse Doppel Protein, In Dhpc Micelles
Biochemistry V. 45 159 2006
PubMed-ID: 16388591  |  Reference-DOI: 10.1021/BI051313F
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PRION-LIKE PROTEIN DOPPEL
    Chains: A
    Engineered: YES
    Fragment: RESIDUES 1-30
    Other Details: SEQUENCE APPEARS NATURALLY IN MUS MUSCULUS, GENE PRND
    Synonym: PRPLP;
DOPPELGANGER
    Synthetic: YES

 Structural Features

(-) Chains, Units

  
NMR Structure (22x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1Z65)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:30
 aligned with PRND_MOUSE | Q9QUG3 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:30
                                    10        20        30
            PRND_MOUSE    1 MKNRLGTWWVAILCMLLASHLSTVKARGIK 30
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains Doppel-1z65A01 A:1-30          Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  1z65 A  1 MKNRLGTWWVAILCMLLASHLSTVKARGIK 30
                                    10        20        30
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1Z65)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Z65)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: Doppel] (1)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (PRND_MOUSE | Q9QUG3)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006878    cellular copper ion homeostasis    Any process involved in the maintenance of an internal steady state of copper ions at the level of a cell.
    GO:0051260    protein homooligomerization    The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
cellular component
    GO:0031225    anchored component of membrane    The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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        PRND_MOUSE | Q9QUG3: 1i17

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