1Z21 - JenaLib

Title :   CRYSTAL STRUCTURE OF THE CORE DOMAIN OF YERSINIA PESTIS VIRULENCE FACTOR YOPR

Authors :   F. D. Schubot, S. Cherry, J. E. Tropea, B. P. Austin, D. S. Waugh

Date :   07 Mar 05 (Deposition) - 07 Jun 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : A

Keywords :   Yersinia Pestis, Plague, Type Iii Secretion, Yopr, Yop, Cell Invasion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. D. Schubot, S. Cherry, B. P. Austin, J. E. Tropea, D. S. Waugh
Crystal Structure Of The Protease-Resistant Core Domain Of Yersinia Pestis Virulence Factor Yopr.
Protein Sci. V. 14 1679 2005
PubMed-ID: 15930010 | Reference-DOI: 10.1110/PS.051446405
(for further references see the PDB file header)

Compounds

Molecule 1 - YOP PROTEINS TRANSLOCATION PROTEIN H
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PDEST-MBP
	Expression System Strain	:	BL31(DE3)CODONPLUS-RIL
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	YOPR(38-149)
	Gene	:	YSCH, LCRP
	Organism Scientific	:	YERSINIA PESTIS
	Organism Taxid	:	632
	Synonym	:	LOW CALCIUM RESPONSE LOCUS PROTEIN P

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:96
 aligned with YSCH_YERPE | P68590 from UniProtKB/Swiss-Prot  Length:165

    Alignment length:104
                                    51        61        71        81        91       101       111       121       131       141    
           YSCH_YERPE    42 SAEKTREVLWQQYYASNPPDHAVLEVLATPVREALLARFGQHQGSVVPAIDLPELRSVLQQFDSFGKRWEAILLQVLEGIKPNESQVGLPYLSELINKELMILL 145
               SCOP domains d1z21a1 A:42-145 Yop proteins translocation protein H, YscH (IcrP)                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains YopR_core-1z21A01 A:42-145                                                                               Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.--------hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 1z21 A  42 SAEKTREVLWQQYYASNPPDHAVLEVLATPVREALLARFGQHQGSVVPAIDLPELRSVLQQFDSFGKRWEAILLQVLEGI--------LPYLSELINKELMILL 145
                                    51        61        71        81        91       101       111       121       131       141    
                                                                                                         121      130

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (YSCH_YERPE | P68590)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0030254	protein secretion by the type III secretion system	The process in which proteins are transferred into the extracellular milieu or directly into host cells by the bacterial type III secretion system; secretion occurs in a continuous process without the distinct presence of periplasmic intermediates and does not involve proteolytic processing of secreted proteins.
cellular component
	GO:0030257	type III protein secretion system complex	A complex of approximately 20 proteins, most of which are located in the cytoplasmic membrane that carries out protein secretion in the bacterial type III secretion system; type III secretion also requires a cytoplasmic, probably membrane-associated ATPase.

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		Asn A:58 - Pro A:59	[ RasMol ]

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