1Z0L - JenaLib

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Theoretical Model (Jmol Viewer)

Title :   MODEL OF MYCOBACTERIOPHAGE L1 REPRESSOR DIMER BOUND TO ITS COGNATE OPERATOR

Authors :   R. Chattopadhyaya, S. Sau

Date :   02 Mar 05 (Deposition) - 22 Mar 05 (Release) - 22 Mar 05 (Revision)

Method :   THEORETICAL MODEL

Resolution :   NOT APPLICABLE

Chains :   Theor. Model : A,B,C,D

Keywords :   L1 Repressor Operator Complex, Lysogeny, Transcription Regulation, Protein/Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Chattopadhyaya, T. Ganguly, S. Sau
Model Of L1 Repressor Dimer Bound To Its Cognate Operator
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - REPRESSOR-LIKE IMMUNITY PROTEIN
	Chains	:	A, B
	Organism Common	:	VIRUSES
	Organism Scientific	:	MYCOBACTERIOPHAGE L5
	Synonym	:	GP71, L1 REPRESSOR

*Molecule 2 - 5'- D(TPAPTPAPGPGPTPGPGPCPTPGPTPCPAPAPGPTPAP T)-3'*
	Chains	:	C
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 3 - 5'- D(APAPTPAPCPTPTPGPAPCPAPGPCPCPAPCPCPTPAP T)-3'*
	Chains	:	D
	Engineered	:	YES
	Synthetic	:	YES


Theoretical Model	:

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1Z0L)

(no "Site" information available for 1Z0L)

(no "SS Bond" information available for 1Z0L)

Theoretical Model

No.	Residues
1	Glu A:130	-	Pro A:131
2	Glu B:130	-	Pro B:131

(no "SAP(SNP)/Variant" information available for 1Z0L)

(no "PROSITE Motif" information available for 1Z0L)

(no "Exon" information available for 1Z0L)

Theoretical Model

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:183
 aligned with VG71_BPML5 | Q05286 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:183
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180   
           VG71_BPML5     1 MSGKIQHKAVVPAPSRIPLTLSEIEDLRRKGFNQTEIAELYGVTRQAVSWHKKTYGGRLTTRQIVQQNWPWDTRKPHDKSKAFQRLRDHGEYMRVGSFRTMSEDKKKRLLSWWKMLRDDDLVLEFDPSIEPYEGMAGGGFRYVPRGIEDDDLLIRVNEHTNLTAEGELLWSWPDDIEELLSEP 183
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhh.....hhhhhhh...eee...hhhhhhhhhhhhhhhh....eeeee..............eeeeee................................eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z0l A   1 MSGKIQHKAVVPAPSRIPLTLSEIEDLRRKGFNQTEIAELYGVTRQAVSWHKKTYGGRLTTRQIVQQNWPWDTRKPHDKSKAFQRLRDHGEYMRVGSFRTMSEDKKKRLLSWWKMLRDDDLVLEFDPSIEPYEGMAGGGFRYVPRGIEDDDLLIRVNEHTNLTAEGELLWSWPDDIEELLSEP 183
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain B from PDB  Type:PROTEIN  Length:183
 aligned with VG71_BPML5 | Q05286 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:183
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180   
           VG71_BPML5     1 MSGKIQHKAVVPAPSRIPLTLSEIEDLRRKGFNQTEIAELYGVTRQAVSWHKKTYGGRLTTRQIVQQNWPWDTRKPHDKSKAFQRLRDHGEYMRVGSFRTMSEDKKKRLLSWWKMLRDDDLVLEFDPSIEPYEGMAGGGFRYVPRGIEDDDLLIRVNEHTNLTAEGELLWSWPDDIEELLSEP 183
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhh...eee...hhhhhhhhhhhhhhhh....eeeee..............eeeeee................................eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z0l B   1 MSGKIQHKAVVPAPSRIPLTLSEIEDLRRKGFNQTEIAELYGVTRQAVSWHKKTYGGRLTTRQIVQQNWPWDTRKPHDKSKAFQRLRDHGEYMRVGSFRTMSEDKKKRLLSWWKMLRDDDLVLEFDPSIEPYEGMAGGGFRYVPRGIEDDDLLIRVNEHTNLTAEGELLWSWPDDIEELLSEP 183
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain C from PDB  Type:DNA  Length:20
                                                    
                 1z0l C  21 TATAGGTGGCTGTCAAGTAT  40
                                    30        40

Chain D from PDB  Type:DNA  Length:20
                                                    
                 1z0l D   1 AATACTTGACAGCCACCTAT  20
                                    10        20

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 1Z0L)

(no "CATH Domain" information available for 1Z0L)

(no "Pfam Domain" information available for 1Z0L)

Theoretical Model(hide GO term definitions)

Chain A,B (VG71_BPML5 | Q05286)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.

Theoretical Model
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(no "Sites" information available for 1z0l)

	Cis Peptide Bonds
		Glu A:130 - Pro A:131	[ RasMol ]
		Glu B:130 - Pro B:131	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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