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(-) Description

Title :  HUMANIZED CABAN33 AT ROOM TEMPERATURE
 
Authors :  K. Conrath, C. Vincke, B. Stijlemans, J. Schymkowitz, K. Decanniere, S. Muyldermans, R. Loris
Date :  01 Mar 05  (Deposition) - 14 Jun 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Antibody, Camel Antibody, Humanization, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Conrath, C. Vincke, B. Stijlemans, J. Schymkowitz, K. Decanniere, L. Wyns, S. Muyldermans, R. Loris
Antigen Binding And Solubility Effects Upon The Veneering Of A Camel Vhh In Framework-2 To Mimic A Vh.
J. Mol. Biol. V. 350 112 2005
PubMed-ID: 15913651  |  Reference-DOI: 10.1016/J.JMB.2005.04.050
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANTI-VSG IMMUNOGLOBULIN HEAVY CHAIN VARIABLE DOMAIN CABAN33
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism CommonARABIAN CAMEL
    Organism ScientificCAMELUS DROMEDARIUS
    Organism Taxid9838

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1YZZ)

(-) Sites  (0, 0)

(no "Site" information available for 1YZZ)

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:95
2A:32 -A:99
3B:22 -B:95
4B:32 -B:99

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YZZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YZZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YZZ)

(-) Exons   (0, 0)

(no "Exon" information available for 1YZZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains d1yzza_ A: automated matches                                                                                        SCOP domains
               CATH domains 1yzzA00 A:1-117 Immunoglobulins                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee.......eeeeeee.....eeeeeee.....eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeee...eeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1yzz A   1 DVQLVESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWVRQAPGKGLEWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCGSIREYWGQGTQVTVS 117
                                    10        20        30        40        50        60        70        80        90       100|      112     
                                                                                                                             100|              
                                                                                                                              103              

Chain B from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains d1yzzb_ B: automated matches                                                                                        SCOP domains
               CATH domains 1yzzB00 B:1-117 Immunoglobulins                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee.......eeeeeeee...eeeeeeee.....eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeee...eeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1yzz B   1 DVQLVESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWVRQAPGKGLEWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCGVIREYWGQGTQVTVS 117
                                    10        20        30        40        50        60        70        80        90       100||     112     
                                                                                                                              101|             
                                                                                                                               104             

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1YZZ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1YZZ)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1yc7 CABAN33 (WILD-TYPE)
1yc8 HUMANIZED CABAN33 (100K)