Chain A from PDB Type:PROTEIN Length:219
aligned with RNC_AQUAE | O67082 from UniProtKB/Swiss-Prot Length:221
Alignment length:219
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211
RNC_AQUAE 2 KMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIKLLEES 220
SCOP domains d1yywa1 A:2-150 RNase III endonuclease catalytic domain d1yywa2 A:151-220 RNase III, C-terminal domain SCOP domains
CATH domains 1yywA01 A:2-142 [code=1.10.1520.10, no name defined] ---------1yywA02 A:152-220 [code=3.30.160.20, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhh....hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh...hhhhhhhh..hhhhhh.........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh...eeeeeeee......eeeeeeee..eeeeeee.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) --RNASE_3_2 PDB: A:4-121 UniProt: 4-121 -----------------------------DS_RBD PDB: A:151-219 UniProt: 151-219 - PROSITE (1)
PROSITE (2) -----------------------------------RNASE_3_1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1yyw A 2 KMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIKLLEES 220
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211
Chain B from PDB Type:PROTEIN Length:219
aligned with RNC_AQUAE | O67082 from UniProtKB/Swiss-Prot Length:221
Alignment length:219
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211
RNC_AQUAE 2 KMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIKLLEES 220
SCOP domains d1yywb1 B:2-150 RNase III endonuclease catalytic domain d1yywb2 B:151-220 RNase III, C-terminal domain SCOP domains
CATH domains 1yywB01 B:2-142 [code=1.10.1520.10, no name defined] ---------1yywB02 B:152-220 [code=3.30.160.20, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhh....hhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeeee.........eeeeeee..eeeeeee...hhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) --RNASE_3_2 PDB: B:4-121 UniProt: 4-121 -----------------------------DS_RBD PDB: B:151-219 UniProt: 151-219 - PROSITE (1)
PROSITE (2) -----------------------------------RNASE_3_1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1yyw B 2 KMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIKLLEES 220
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211
Chain C from PDB Type:PROTEIN Length:218
aligned with RNC_AQUAE | O67082 from UniProtKB/Swiss-Prot Length:221
Alignment length:218
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211
RNC_AQUAE 2 KMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIKLLEE 219
SCOP domains d1yywc1 C:2-150 RNase III endonuclease catalytic domain d1yywc2 C:151-219 RNase III, C-terminal domain SCOP domains
CATH domains 1yywC01 C:2-142 [code=1.10.1520.10, no name defined] ---------1yywC02 C:152-219 [code=3.30.160.20, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhh....hhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...hhhhh.............hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhh....eeeeeeee......eeeeeeee..eeeeeee.hhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) --RNASE_3_2 PDB: C:4-121 UniProt: 4-121 -----------------------------DS_RBD PDB: C:151-219 UniProt: 151-219 PROSITE (1)
PROSITE (2) -----------------------------------RNASE_3_1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1yyw C 2 KMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIKLLEE 219
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211
Chain D from PDB Type:PROTEIN Length:219
aligned with RNC_AQUAE | O67082 from UniProtKB/Swiss-Prot Length:221
Alignment length:219
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211
RNC_AQUAE 2 KMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIKLLEES 220
SCOP domains d1yywd1 D:2-150 RNase III endonuclease catalytic domain d1yywd2 D:151-220 RNase III, C-terminal domain SCOP domains
CATH domains 1yywD01 D:2-142 [code=1.10.1520.10, no name defined] ---------1yywD02 D:152-220 [code=3.30.160.20, no name defined] CATH domains
Pfam domains (1) -----------------------------------Ribonuclease_3-1yywD05 D:37-121 ------------------------------dsrm-1yywD01 D:152-217 --- Pfam domains (1)
Pfam domains (2) -----------------------------------Ribonuclease_3-1yywD06 D:37-121 ------------------------------dsrm-1yywD02 D:152-217 --- Pfam domains (2)
Pfam domains (3) -----------------------------------Ribonuclease_3-1yywD07 D:37-121 ------------------------------dsrm-1yywD03 D:152-217 --- Pfam domains (3)
Pfam domains (4) -----------------------------------Ribonuclease_3-1yywD08 D:37-121 ------------------------------dsrm-1yywD04 D:152-217 --- Pfam domains (4)
Sec.struct. author ..hhhhhhhhh.....hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh...eeeeeeee.....eeeeeeeee..eeeeeee.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) --RNASE_3_2 PDB: D:4-121 UniProt: 4-121 -----------------------------DS_RBD PDB: D:151-219 UniProt: 151-219 - PROSITE (1)
PROSITE (2) -----------------------------------RNASE_3_1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1yyw D 2 KMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELIKLLEES 220
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211
Chain E from PDB Type:RNA Length:12
1yyw E 1 AAAUAUAUAUUU 12
10
Chain F from PDB Type:RNA Length:12
1yyw F 13 AAAUAUAUAUUU 24
22
Chain G from PDB Type:RNA Length:12
1yyw G 1 AAAUAUAUAUUU 12
10
Chain H from PDB Type:RNA Length:12
1yyw H 13 AAAUAUAUAUUU 24
22
Chain I from PDB Type:RNA Length:12
1yyw I 1 AAAUAUAUAUUU 12
10
Chain J from PDB Type:RNA Length:12
1yyw J 13 AAAUAUAUAUUU 24
22
Chain K from PDB Type:RNA Length:12
1yyw K 1 AAAUAUAUAUUU 12
10
Chain L from PDB Type:RNA Length:12
1yyw L 13 AAAUAUAUAUUU 24
22
Legend: |
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(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |