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NMR Structure - model 1 (Jmol Viewer)

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Title :   TYPE ALPHA TRANSFORMING GROWTH FACTOR, NMR, 15 MODELS AFTER ECEPP/3 ENERGY MINIMIZATION

Authors :   F. J. Moy, G. T. Montelione, H. A. Scheraga

Date :   01 Apr 96 (Deposition) - 17 Aug 96 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (15x)

Keywords :   Egf-Like Domain Structure, Growth Factor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. J. Moy, Y. C. Li, P. Rauenbuehler, M. E. Winkler, H. A. Scheraga, G. T. Montelione
Solution Structure Of Human Type-Alpha Transforming Growth Factor Determined By Heteronuclear Nmr Spectroscopy And Refined By Energy Minimization With Restraints.
Biochemistry V. 32 7334 1993
PubMed-ID: 8338831 | Reference-DOI: 10.1021/BI00080A003
(for further references see the PDB file header)

Molecule 1 - TRANSFORMING GROWTH FACTOR ALPHA
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Gene	:	HUMAN TGF-ALPHA 1YUG
	Expression System Plasmid	:	PTE5
	Expression System Taxid	:	562
	Gene	:	HUMAN TGF-ALPHA 1YUG
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	TGF-ALPHA, H-TGF-ALPHA


NMR Structure (15x)	:

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1YUG)

(no "Site" information available for 1YUG)

NMR Structure

No.	Residues
1	A:8	-	A:21
2	A:16	-	A:32
3	A:34	-	A:43

(no "Cis Peptide Bond" information available for 1YUG)

(no "SAP(SNP)/Variant" information available for 1YUG)

NMR Structure (3, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EGF_3	PS50026	EGF-like domain profile.	TGFA_HUMAN	43-83	1	A:4-44
2	EGF_1	PS00022	EGF-like domain signature 1.	TGFA_HUMAN	71-82	1	A:32-43
3	EGF_2	PS01186	EGF-like domain signature 2.	TGFA_HUMAN	71-82	1	A:32-43

NMR Structure (2, 2)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2a	ENST00000295400	2a	ENSE00001855336	chr2:70781147-70780860	288	TGFA_HUMAN	1-14	14	0	-	-
1.4	ENST00000295400	4	ENSE00001164088	chr2:70742044-70741991	54	TGFA_HUMAN	14-32	19	0	-	-
1.5a	ENST00000295400	5a	ENSE00001129794	chr2:70692868-70692748	121	TGFA_HUMAN	32-72	41	1	A:1-33	33
1.7b	ENST00000295400	7b	ENSE00002188045	chr2:70683620-70683471	150	TGFA_HUMAN	72-122	51	1	A:33-50	18
1.8	ENST00000295400	8	ENSE00001129787	chr2:70680459-70680350	110	TGFA_HUMAN	122-159	38	0	-	-
1.10d	ENST00000295400	10d	ENSE00001849780	chr2:70677998-70674412	3587	TGFA_HUMAN	159-160	2	0	-	-

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:50
 aligned with TGFA_HUMAN | P01135 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:50
                                    49        59        69        79        89
            TGFA_HUMAN   40 VVSHFNDCPDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLA 89
               SCOP domains d1yuga_ A: Transforming growth factor alpha        SCOP domains
               CATH domains 1yugA00 A:1-50 Laminin                             CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhh...eeeeee....eeeeee................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---EGF_3  PDB: A:4-44 UniProt: 43-83        ------ PROSITE (1)
                PROSITE (2) -------------------------------EGF_2       ------- PROSITE (2)
                PROSITE (3) -------------------------------EGF_1       ------- PROSITE (3)
           Transcript 1 (1) Exon 1.5a  PDB: A:1-33           ----------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------Exon 1.7b          Transcript 1 (2)
                  1yug A  1 VVSHFNDCPDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGARCEHADLLA 50
                                    10        20        30        40        50

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

NMR Structure

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Small proteins (3458)

Fold: Knottins (small inhibitors, toxins, lectins) (761)

Superfamily: EGF/Laminin (347)

Family: EGF-type module (304)

Protein domain: Transforming growth factor alpha (7)

Human (Homo sapiens) [TaxId: 9606] (7)

d1yuga_

NMR Structure

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Ribbon (789)

Topology: Laminin (270)

Homologous Superfamily: Laminin (263)

Human (Homo sapiens) (195)

1yugA00

A:1-50

(no "Pfam Domain" information available for 1YUG)

NMR Structure(hide GO term definitions)

Chain A (TGFA_HUMAN | P01135)

molecular function
	GO:0005154	epidermal growth factor receptor binding	Interacting selectively and non-covalently with the epidermal growth factor receptor.
	GO:0008083	growth factor activity	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0048208	COPII vesicle coating	The addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat.
	GO:0006888	ER to Golgi vesicle-mediated transport	The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
	GO:0000187	activation of MAPK activity	The initiation of the activity of the inactive enzyme MAP kinase (MAPK).
	GO:0008283	cell proliferation	The multiplication or reproduction of cells, resulting in the expansion of a cell population.
	GO:0051781	positive regulation of cell division	Any process that activates or increases the frequency, rate or extent of cell division.
	GO:0045741	positive regulation of epidermal growth factor-activated receptor activity	Any process that activates or increases the frequency, rate or extent of EGF-activated receptor activity.
	GO:0050679	positive regulation of epithelial cell proliferation	Any process that activates or increases the rate or extent of epithelial cell proliferation.
	GO:0045840	positive regulation of mitotic nuclear division	Any process that activates or increases the frequency, rate or extent of mitosis.
cellular component
	GO:0012507	ER to Golgi transport vesicle membrane	The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi.
	GO:0000139	Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
	GO:0016323	basolateral plasma membrane	The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0031410	cytoplasmic vesicle	A vesicle found in the cytoplasm of a cell.
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane	The lipid bilayer surrounding any of the compartments of the endoplasmic reticulum (ER)-Golgi intermediate compartment system.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0048471	perinuclear region of cytoplasm	Cytoplasm situated near, or occurring around, the nucleus.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

NMR Structure
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	TGFA_HUMAN \| P01135	:	1gk5 1mox 1p9j 1yuf 2tgf 3e50 3tgf 4tgf 5kn5

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