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(-) Description

Title :  CRYSTAL STRUCTURE OF ACETYL-COA DECARBOXYLASE/SYNTHASE COMPLEX EPSILON SUBUNIT 2
 
Authors :  C. Chang, E. Evdokimova, A. Savchenko, A. Edwards, A. Joachimiak, Midw Center For Structural Genomics (Mcsg)
Date :  10 Feb 05  (Deposition) - 22 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Structural Genomics, Acetyl-Coa Decarboxylase-Synthase Complex, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, E. Evdokimova, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of Acetyl-Coa Decarboxylase/Synthase Complex Epsilon Subunit 2 From Archaeoglobus Fulgidus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETYL-COA DECARBOXYLASE/SYNTHASE COMPLEX EPSILON SUBUNIT 2
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CDHB2
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234
    Synonym: ACIDS COMPLEX EPSILON SUBUNIT 2

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1YTL)

(-) Sites  (0, 0)

(no "Site" information available for 1YTL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YTL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YTL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YTL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YTL)

(-) Exons   (0, 0)

(no "Exon" information available for 1YTL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
 aligned with ACDE2_ARCFU | O30273 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:158
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167        
          ACDE2_ARCFU    18 KMATLLEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPNADMSFGNLWKKEEDYLKLLDEILAEL 175
               SCOP domains d1ytla1 A:17-174 Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2                                                                            SCOP domains
               CATH domains 1ytlA00 A:17-174 TPP-binding domain                                                                                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..hhhhhhhhhhhh..eeeee....hhhhhhhhhhhhh...eeeee.hhhhhhhhh.hhhhheeehhhhhhhhhhh.............eeeee..hhhhhhhhhhhhhhhh...eeee..........ee...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ytl A  17 KMATLLEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPNADMSFGNLWKKEEDYLKLLDEILAEL 174
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166        


Chain B from PDB  Type:PROTEIN  Length:158
 aligned with ACDE2_ARCFU | O30273 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:158
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167        
          ACDE2_ARCFU    18 KMATLLEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPNADMSFGNLWKKEEDYLKLLDEILAEL 175
               SCOP domains d1ytlb_ B: Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2                                                                                  SCOP domains
               CATH domains 1ytlB00 B:17-174 TPP-binding domain                                                                                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..hhhhhhhhhhh..eeeee....hhhhhhhhhhhhh...eeeee.hhhhhhhhh.hhhhheeehhhhhhhhhhh.............eeeee..hhhhhhhhhhhhhhhh...eeee..........eee..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ytl B  17 KMATLLEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPNADMSFGNLWKKEEDYLKLLDEILAEL 174
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166        


Chain C from PDB  Type:PROTEIN  Length:157
 aligned with ACDE2_ARCFU | O30273 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:157
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       
          ACDE2_ARCFU    19 MATLLEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPNADMSFGNLWKKEEDYLKLLDEILAEL 175
               SCOP domains d1ytlc_ C: Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2                                                                                 SCOP domains
               CATH domains 1ytlC00 C:18-174 TPP-binding domain                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...hhhhhhhhhhh..eeeee....hhhhhhhhhhhhh...eeeee.hhhhhhhhh.hhhhheeehhhhhhhhhhh.............eeeee..hhhhhhhhhhhhhhhh...eeee..........ee...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ytl C  18 MATLLEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPNADMSFGNLWKKEEDYLKLLDEILAEL 174
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       


Chain D from PDB  Type:PROTEIN  Length:158
 aligned with ACDE2_ARCFU | O30273 from UniProtKB/Swiss-Prot  Length:175

    Alignment length:158
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167        
          ACDE2_ARCFU    18 KMATLLEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPNADMSFGNLWKKEEDYLKLLDEILAEL 175
               SCOP domains d1ytld_ D: Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2                                                                                  SCOP domains
               CATH domains 1ytlD00 D:17-174 TPP-binding domain                                                                                                                            CATH domains
           Pfam domains (1) CO_dh-1ytlD01 D:17-171                                                                                                                                     --- Pfam domains (1)
           Pfam domains (2) CO_dh-1ytlD02 D:17-171                                                                                                                                     --- Pfam domains (2)
           Pfam domains (3) CO_dh-1ytlD03 D:17-171                                                                                                                                     --- Pfam domains (3)
           Pfam domains (4) CO_dh-1ytlD04 D:17-171                                                                                                                                     --- Pfam domains (4)
         Sec.struct. author ...ee...hhhhhhhhhhh..eeeee....hhhhhhhhhhhhh...eeeee.hhhhhhhhh.hhhhheeehhhhhhhhhhh.............eeeee..hhhhhhhhhhhhhhhh...eeee..........ee...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ytl D  17 KMATLLEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRYYHPNADMSFGNLWKKEEDYLKLLDEILAEL 174
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: FAD_DHS (82)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (ACDE2_ARCFU | O30273)
biological process
    GO:0019385    methanogenesis, from acetate    The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including acetate.

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