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(-) Description

Title :  HYPOTHETICAL PROTEIN FROM LEISHMANIA MAJOR UNKNOWN FUNCTION SEQUENCE HOMOLOGUE TO HUMAN P32 PROTEIN
 
Authors :  J. Caruthers, E. A. Merritt, Structural Genomics Of Pathogenic Pr Consortium (Sgpp)
Date :  01 Feb 05  (Deposition) - 22 Feb 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Structural Genomics, Psi, Protein Structure Initiative, Structural Genomics Of Pathogenic Protozoa Consortium, Sgpp, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Caruthers, E. A. Merritt, Structural Genomics Of Pathogenic Protozoa Consortium (Sgpp
Hypothetical Protein From Leishmania Major Unknown Function Sequence Homologue To Human P32 Protein
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN LMAJ011689
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Taxid: 562
    Expression System Vector: PLASMID
    Organism Scientific: LEISHMANIA MAJOR
    Organism Taxid: 5664

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1YQF)

(-) Sites  (0, 0)

(no "Site" information available for 1YQF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YQF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YQF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YQF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YQF)

(-) Exons   (0, 0)

(no "Exon" information available for 1YQF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:182
 aligned with Q4Q7K6_LEIMA | Q4Q7K6 from UniProtKB/TrEMBL  Length:195

    Alignment length:182
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  
         Q4Q7K6_LEIMA    14 ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDSDKANSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 195
               SCOP domains d1yqfa1 A:14-195 Hypothetical protein Lmaj011689                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh..............eeee.....eeeeeeee..eeeeeeee..........eeeeeeee.....eeeeeeeee..eeeeeeeeee.hhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yqf A  14 ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDSDKANSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 195
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  


Chain B from PDB  Type:PROTEIN  Length:177
 aligned with Q4Q7K6_LEIMA | Q4Q7K6 from UniProtKB/TrEMBL  Length:195

    Alignment length:182
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  
         Q4Q7K6_LEIMA    14 ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDSDKANSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 195
               SCOP domains d1yqfb_ B: Hypothetical protein Lmaj011689                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..............eeee.....eeeeeeee..eeeeeeee.....-----.eeeeeee.....eeeeeeee....eeeeeeeee.hhhhhhh.hhhhhhhhhhh.........hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yqf B  14 ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDS-----HNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 195
                                    23        33        43        53        63        73    |    -|       93       103       113       123       133       143       153       163       173       183       193  
                                                                                           78    84                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:181
 aligned with Q4Q7K6_LEIMA | Q4Q7K6 from UniProtKB/TrEMBL  Length:195

    Alignment length:181
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194 
         Q4Q7K6_LEIMA    15 SDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDSDKANSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 195
               SCOP domains d1yqfc_ C: Hypothetical protein Lmaj011689                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.............eeee.....eeeeeeee..eeeeeeee...........eeeeeee.....eeeeeeeee..eeeeeeeeee.hhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yqf C  15 SDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDSDKANSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 195
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194 


Chain D from PDB  Type:PROTEIN  Length:182
 aligned with Q4Q7K6_LEIMA | Q4Q7K6 from UniProtKB/TrEMBL  Length:195

    Alignment length:182
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  
         Q4Q7K6_LEIMA    14 ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDSDKANSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 195
               SCOP domains d1yqfd_ D: Hypothetical protein Lmaj011689                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.............eeee.....eeeeeeee..eeeeeeee..........eeeeeeee.....eeeeeeeee..eeeeeeeeee.hhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yqf D  14 ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDSDKANSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 195
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  


Chain E from PDB  Type:PROTEIN  Length:179
 aligned with Q4Q7K6_LEIMA | Q4Q7K6 from UniProtKB/TrEMBL  Length:195

    Alignment length:182
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  
         Q4Q7K6_LEIMA    14 ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDSDKANSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 195
               SCOP domains d1yqfe_ E: Hypothetical protein Lmaj011689                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..............eeee.....eeeeeeee..eeeeeeee.....---...eeeeeee.....eeeeeeee....eeeeeeeee.hhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yqf E  14 ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDS---NSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 195
                                    23        33        43        53        63        73    |   83        93       103       113       123       133       143       153       163       173       183       193  
                                                                                           78  82                                                                                                                 


Chain F from PDB  Type:PROTEIN  Length:182
 aligned with Q4Q7K6_LEIMA | Q4Q7K6 from UniProtKB/TrEMBL  Length:195

    Alignment length:182
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  
         Q4Q7K6_LEIMA    14 ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDSDKANSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 195
               SCOP domains d1yqff_ F: Hypothetical protein Lmaj011689                                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------------------------------MAM33-1yqfF01 F:57-194                                                                                                                    - Pfam domains (1)
           Pfam domains (2) -------------------------------------------MAM33-1yqfF02 F:57-194                                                                                                                    - Pfam domains (2)
           Pfam domains (3) -------------------------------------------MAM33-1yqfF03 F:57-194                                                                                                                    - Pfam domains (3)
           Pfam domains (4) -------------------------------------------MAM33-1yqfF04 F:57-194                                                                                                                    - Pfam domains (4)
           Pfam domains (5) -------------------------------------------MAM33-1yqfF05 F:57-194                                                                                                                    - Pfam domains (5)
           Pfam domains (6) -------------------------------------------MAM33-1yqfF06 F:57-194                                                                                                                    - Pfam domains (6)
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..............eeee.....eeeeeeee..eeeeeeee..........eeeeeeee.....eeeeeeeee..eeeeeeeeee.hhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yqf F  14 ASDAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDSDKANSHNIFVYITQKNGQTMQADLSIEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 195
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1YQF)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: no clan defined [family: MAM33] (4)
(-)
Family: MAM33 (4)
(-)
Leishmania major (1)
1aMAM33-1yqfF01F:57-194
1bMAM33-1yqfF02F:57-194
1cMAM33-1yqfF03F:57-194
1dMAM33-1yqfF04F:57-194
1eMAM33-1yqfF05F:57-194
1fMAM33-1yqfF06F:57-194

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q4Q7K6_LEIMA | Q4Q7K6)
cellular component
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.

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 Related Entries

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