1YP2 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF POTATO TUBER ADP-GLUCOSE PYROPHOSPHORYLASE

Authors :   X. Jin, M. A. Ballicora, J. Preiss, J. H. Geiger

Date :   29 Jan 05 (Deposition) - 15 Mar 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.11

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Adp-Glucose Synthase, Adp-Glucose Pyrophosphorylase, Agpase B, Alpha-D-Glucose-1-Phosphate Adenyl Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. Jin, M. A. Ballicora, J. Preiss, J. H. Geiger
Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase.
Embo J. V. 24 694 2005
PubMed-ID: 15692569 | Reference-DOI: 10.1038/SJ.EMBOJ.7600551
(for further references see the PDB file header)

Molecule 1 - GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE SMALL SUBUNIT
	Chains	:	A, B, C, D
	EC Number	:	2.7.7.27
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMLAUGH10
	Expression System Strain	:	AC70R1-504
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Common	:	POTATO
	Organism Scientific	:	SOLANUM TUBEROSUM
	Organism Taxid	:	4113
	Synonym	:	ADP-GLUCOSE SYNTHASE, ADP-GLUCOSE PYROPHOSPHORYLASE, AGPASE B, ALPHA-D-GLUCOSE-1-PHOSPHATE ADENYL TRANSFERASE

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 16)

No.	Name	Count	Type	Full Name
1	PMB	4	Ligand/Ion	PARA-MERCURY-BENZENESULFONIC ACID
2	SO4	12	Ligand/Ion	SULFATE ION

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:41 , PRO A:47 , ARG A:53 , ASP A:370 , LYS A:404 , LYS A:441 , HOH A:3265	BINDING SITE FOR RESIDUE SO4 A 2000
02	AC2	SOFTWARE	ARG B:41 , PRO B:47 , ARG B:53 , SER B:80 , ASP B:370 , LYS B:404 , LYS B:441 , HOH B:3277 , HOH B:3352	BINDING SITE FOR RESIDUE SO4 B 2001
03	AC3	SOFTWARE	ARG C:41 , PRO C:47 , ARG C:53 , SER C:80 , ASP C:370 , LYS C:404 , LYS C:441 , HOH C:3309 , HOH C:3370	BINDING SITE FOR RESIDUE SO4 C 2002
04	AC4	SOFTWARE	ARG D:41 , PRO D:47 , ARG D:53 , SER D:80 , ASP D:370 , LYS D:404 , LYS D:441 , HOH D:3261	BINDING SITE FOR RESIDUE SO4 D 2003
05	AC5	SOFTWARE	ARG A:83 , LYS D:69 , HIS D:134 , THR D:135 , HOH D:3308 , HOH D:3461	BINDING SITE FOR RESIDUE SO4 D 2004
06	AC6	SOFTWARE	ARG B:83 , LYS C:69 , HIS C:134 , THR C:135 , HOH C:3266	BINDING SITE FOR RESIDUE SO4 C 2005
07	AC7	SOFTWARE	LYS B:69 , HIS B:134 , THR B:135 , HOH B:3297 , HOH B:3471 , ARG C:83	BINDING SITE FOR RESIDUE SO4 B 2006
08	AC8	SOFTWARE	LYS A:69 , HIS A:134 , THR A:135 , HOH A:3249 , HOH A:3380 , ARG D:83	BINDING SITE FOR RESIDUE SO4 A 2007
09	AC9	SOFTWARE	ARG A:53 , HIS A:84 , GLN A:314 , ARG A:316 , HOH A:3301 , HOH A:3386	BINDING SITE FOR RESIDUE SO4 A 2008
10	BC1	SOFTWARE	ARG B:53 , HIS B:84 , GLN B:314 , ARG B:316 , HOH B:3279 , HOH B:3290 , HOH B:3327 , HOH B:3451	BINDING SITE FOR RESIDUE SO4 B 2009
11	BC2	SOFTWARE	ARG C:53 , HIS C:84 , GLN C:314 , ARG C:316 , HOH C:3252 , HOH C:3256 , HOH C:3295 , HOH C:3473	BINDING SITE FOR RESIDUE SO4 C 2010
12	BC3	SOFTWARE	ARG D:53 , HIS D:84 , GLN D:314 , ARG D:316 , HOH D:3259 , HOH D:3265 , HOH D:3319	BINDING SITE FOR RESIDUE SO4 D 2011
13	BC4	SOFTWARE	LYS A:322 , LEU A:324 , VAL A:338 , ILE A:339 , LYS A:340 , CYS A:354 , ILE A:355 , HOH A:3462 , LYS B:297 , PRO B:298	BINDING SITE FOR RESIDUE PMB A 3226
14	BC5	SOFTWARE	LYS A:297 , PRO A:298 , LYS B:322 , VAL B:338 , LYS B:340 , CYS B:354 , HOH B:3362 , HOH B:3403	BINDING SITE FOR RESIDUE PMB B 3227
15	BC6	SOFTWARE	LYS C:322 , VAL C:338 , ILE C:339 , LYS C:340 , CYS C:354 , ILE C:355 , ARG C:378 , HOH C:3249 , HOH C:3310 , HOH C:3386 , HOH C:3428 , PRO D:298	BINDING SITE FOR RESIDUE PMB C 3228
16	BC7	SOFTWARE	LYS C:297 , PRO C:298 , LYS D:322 , LEU D:324 , VAL D:338 , ILE D:339 , LYS D:340 , CYS D:354 , ARG D:378 , HOH D:3234 , HOH D:3423	BINDING SITE FOR RESIDUE PMB D 3229

Asymmetric/Biological Unit

No.	Residues
1	A:12	-	C:12
2	B:12	-	D:12

Asymmetric/Biological Unit

No.	Residues
1	Asp A:14	-	Pro A:15
2	Tyr A:35	-	Pro A:36
3	Asp B:14	-	Pro B:15
4	Tyr B:35	-	Pro B:36
5	Lys B:297	-	Pro B:298
6	Asp C:14	-	Pro C:15
7	Tyr C:35	-	Pro C:36
8	Asp D:14	-	Pro D:15
9	Tyr D:35	-	Pro D:36
10	Lys D:297	-	Pro D:298

Asymmetric/Biological Unit (1, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_GLGS_SOLTU_001 *	I	520	V	GLGS_SOLTU	---	---	A/B/C/D	I	450	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ADP_GLC_PYROPHOSPH_1	PS00808	ADP-glucose pyrophosphorylase signature 1.	GLGS_SOLTU	97-116	4	A:33-46 B:32-46 C:27-46 D:32-46
2	ADP_GLC_PYROPHOSPH_2	PS00809	ADP-glucose pyrophosphorylase signature 2.	GLGS_SOLTU	186-194	4	A:116-124 B:117-124 C:116-124 D:117-124
3	ADP_GLC_PYROPHOSPH_3	PS00810	ADP-glucose pyrophosphorylase signature 3.	GLGS_SOLTU	298-308	4	A:228-238 B:228-238 C:228-238 D:228-238

(no "Exon" information available for 1YP2)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:428
 aligned with GLGS_SOLTU | P23509 from UniProtKB/Swiss-Prot  Length:521

    Alignment length:442
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519  
           GLGS_SOLTU    80 QTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 521
               SCOP domains d1yp2a2 A:10-316       Glucose-1-phosphate adenylyltransferase small subunit, cat        alytic domain                                                                                                                                                                                                             d1yp2a1 A:317-451 Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhheeeeee------.........hhhh.ee...ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhhhh.--------..eeeeee............hhhhhhhhhhhhhh.....eeeeee..ee...hhhhhhhhhhhh...eeeeeeeehhhhhh..eeeee.....eeeeee..hhhhhhhh..hhhhhh.hhhhhhhh.eeeeeeeeeeehhhhhhhhhh..........hhhhhhhhh...eeeee.....ee..hhhhhhhhhhhhhh........................eeeeeeeeeeeee....eeeeeeee..ee....ee....eee..ee.......hhhhhhhhhh......ee....eee.eee....ee....ee........eeehhh.eeee..eeee....ee....ee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V- SAPs(SNPs)
                    PROSITE -----------------ADP_GLC_PYROPHOSPH_1---------------------------------------------------------------------ADP_GLC_P-------------------------------------------------------------------------------------------------------ADP_GLC_PYR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yp2 A  10 QTCLDPDASRSVLGIIL------RLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA--------EGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451
                                    19      |  -   |    39        49        59        69        79        89|       99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449  
                                           26     33                                                       90       99

Chain B from PDB  Type:PROTEIN  Length:426
 aligned with GLGS_SOLTU | P23509 from UniProtKB/Swiss-Prot  Length:521

    Alignment length:441
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520 
           GLGS_SOLTU    81 TCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 521
               SCOP domains d1yp2b2 B:11-316      Glucose-1-phosphate adenylyltransferase small subunit, catal      ytic domain                                                                                                                                                                                                               d1yp2b1 B:317-451 Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhheeeeee-----..........hhhh.ee...ee.hhhhhhhhhhh...eeeeee...hhhhhhhhhhhh...------..eeeeee......----..hhhhhhhhhhhhhh.....eeeeee..ee...hhhhhhhhhhhh...eeeeeeee..hhhhhh.eeee.....eeeee...hhhhhhhh.........hhhhhhhh.eeeeeeeeeeehhhhhhhhhh..........hhhhhhhhh...eeeee.....ee..hhhhhhhhhhhh..........................eeeeeeeeeeeee....eeeeeeee..ee....ee....eee..ee..........hhhhhh.......ee....eee.eee....ee....ee........eeehhh.eeee..eeee....ee....ee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V- SAPs(SNPs)
                    PROSITE ----------------ADP_GLC_PYROPHOSPH_1---------------------------------------------------------------------ADP_GLC_P-------------------------------------------------------------------------------------------------------ADP_GLC_PYR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yp2 B  11 TCLDPDASRSVLGIIL-----TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN------EGFVEVLAAQQSPE----FQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451
                                    20     |   - |      40        50        60        70        80        90 |     100       110 |    |120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450 
                                          26    32                                                          92     99          112  117

Chain C from PDB  Type:PROTEIN  Length:432
 aligned with GLGS_SOLTU | P23509 from UniProtKB/Swiss-Prot  Length:521

    Alignment length:442
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519  
           GLGS_SOLTU    80 QTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 521
               SCOP domains d1yp2c2 C:10-316 Gl   ucose-1-phosphate adenylyltransferase small subunit, catalyt       ic domain                                                                                                                                                                                                                 d1yp2c1 C:317-451 Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhheeeeee..---..........hhhh.ee...ee.hhhhhhhhhh....eeeeee...hhhhhhhhhhhh..-------..eeeeee............hhhhhhhhhhhhhhh....eeeeee..ee...hhhhhhhhhhhh...eeeeeeeehhhhhh..eeeee.....eeeeee..hhhhhhh...hhhhhh.hhhhhhhh.eeeeeeeeeeehhhhhhhhhh..........hhhhhhhhh...eeeee.....ee..hhhhhhhhhhhhhh........................eeeeeeeeeeeee....eeeeeeee..ee....ee....eee..ee.......hhhhhhhhhhhh....ee....eee.eee....ee....ee........eeehhh.eeee..eeee....ee....ee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V- SAPs(SNPs)
                    PROSITE -----------------ADP_GLC_PYROPHOSPH_1---------------------------------------------------------------------ADP_GLC_P-------------------------------------------------------------------------------------------------------ADP_GLC_PYR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yp2 C  10 QTCLDPDASRSVLGIILGG---TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS-------EGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451
                                    19        |-  |     39        49        59        69        79        89 |      99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449  
                                             28  32                                                         91      99

Chain D from PDB  Type:PROTEIN  Length:423
 aligned with GLGS_SOLTU | P23509 from UniProtKB/Swiss-Prot  Length:521

    Alignment length:441
                                    90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520 
           GLGS_SOLTU    81 TCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 521
               SCOP domains d1yp2d2 D:11-316      Glucose-1-phosphate adenylyltransferase small subunit, ca        talytic domain                                                                                                                                                                                                             d1yp2d1 D:317-451 Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------NTP_t     ransferase-1yp2D01 D:22-297                                                                                                                                                                                                                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----------NTP_t     ransferase-1yp2D02 D:22-297                                                                                                                                                                                                                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -----------NTP_t     ransferase-1yp2D03 D:22-297                                                                                                                                                                                                                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -----------NTP_t     ransferase-1yp2D04 D:22-297                                                                                                                                                                                                                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author .....hhhhheeeeee-----..........hhhh.ee...ee.hhhhhhhhhh....eeeeee...hhhhhhhhhhhh--------...eeeeee.....-----..hhhhhhhhhhhhhhh....eeeeee..ee...hhhhhhhhhhhh...eeeeeeeehhhhhh..eeeee.....eeeeee..hhhhhhh..........hhhhhhhh.eeeeeeeeeeehhhhhhhhhh..........hhhhhhhhh...eeeee.....ee..hhhhhhhhhhhhhh........................eeeeeeeeeeeee....eeeeeeee..ee....ee...eeee..ee.......hhhhhhhhhhh.....ee....eee.eee....ee....ee........eeehhh.eeee..eeee....ee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V- SAPs(SNPs)
                    PROSITE ----------------ADP_GLC_PYROPHOSPH_1---------------------------------------------------------------------ADP_GLC_P-------------------------------------------------------------------------------------------------------ADP_GLC_PYR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yp2 D  11 TCLDPDASRSVLGIIL-----TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY--------NEGFVEVLAAQQSP-----FQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451
                                    20     |   - |      40        50        60        70        80        |-       100       110|     |120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450 
                                          26    32                                                       89       98          111   117

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 1YP2)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GT-A (172)

Family: NTP_transferase (15)

Solanum tuberosum (Potato) (3)

1a	NTP_transferase-1yp2D01	D:22-297
1b	NTP_transferase-1yp2D02	D:22-297
1c	NTP_transferase-1yp2D03	D:22-297
1d	NTP_transferase-1yp2D04	D:22-297

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (GLGS_SOLTU | P23509)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0008878	glucose-1-phosphate adenylyltransferase activity	Catalysis of the reaction: alpha-D-glucose 1-phosphate + ATP = ADP-glucose + diphosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0009058	biosynthetic process	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
	GO:0005978	glycogen biosynthetic process	The chemical reactions and pathways resulting in the formation of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0019252	starch biosynthetic process	The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants.
cellular component
	GO:0009501	amyloplast	A plastid whose main function is to synthesize and store starch.
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		PMB	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Asp A:14 - Pro A:15	[ RasMol ]
		Asp B:14 - Pro B:15	[ RasMol ]
		Asp C:14 - Pro C:15	[ RasMol ]
		Asp D:14 - Pro D:15	[ RasMol ]
		Lys B:297 - Pro B:298	[ RasMol ]
		Lys D:297 - Pro D:298	[ RasMol ]
		Tyr A:35 - Pro A:36	[ RasMol ]
		Tyr B:35 - Pro B:36	[ RasMol ]
		Tyr C:35 - Pro C:36	[ RasMol ]
		Tyr D:35 - Pro D:36	[ RasMol ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1yp2
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	GLGS_SOLTU \| P23509
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	2.7.7.27
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	GLGS_SOLTU \| P23509
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	GLGS_SOLTU \| P23509	:	1yp3 1yp4

(no "Related Entries Specified in the PDB File" available for 1YP2)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 16)

Sites (16, 16)

SS Bonds (2, 2)

Cis Peptide Bonds (10, 10)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 4)

PROSITE Motifs (3, 12)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 8)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (13, 13)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File