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(-) Description

Title :  STRUCTURE OF THE CONSERVED PROTEIN OF UNKNOWN FUNCTION PA3696 FROM PSEUDOMONAS AERUGINOSA
 
Authors :  J. R. Walker, X. Xu, J. Gu, A. Joachimiak, A. Edwards, A. Savchenko, Midw Center For Structural Genomics (Mcsg)
Date :  28 Jan 05  (Deposition) - 26 Apr 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Structural Genomics; Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Walker, X. Xu, J. Gu, A. Savchenko
X-Ray Structure Of The Conserved Hypothetical Protein Pa369
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PA3696
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28-LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PA3696
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PAO1

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 26)

Asymmetric Unit (1, 26)
No.NameCountTypeFull Name
1MSE26Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1YOX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YOX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YOX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YOX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YOX)

(-) Exons   (0, 0)

(no "Exon" information available for 1YOX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:190
 aligned with Q9HXU4_PSEAE | Q9HXU4 from UniProtKB/TrEMBL  Length:248

    Alignment length:240
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244
         Q9HXU4_PSEAE     5 ELDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSAGKRKLGGESVFMTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATFRAREEVR 244
               SCOP domains d1yoxa1 A:5-244 Hypothetical protein PA3696                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.....eeeeee....eeee....eeeee..eeee..---------------------------.eeeee.....eeeee.....eeeeeee.hhhh.eeeee...eeeee........------------....eeeee...eeeeeee..eeeeeeeeeeeeee...eeee...ee..eee..-----------.eeeeeeeeeeeeee..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1yox A   5 ELDYRILGESmQTVEIELDPGETVIAEAGAmNYmTGDIRFTAR---------------------------mTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIA------------EGFILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAG-----------LLLTTLKGSGTVWLQSLPFSRLAGRIYDATFRAREEVR 244
                                    14|       24        34|  |    44  |      -         -         -|       84        94       104       114       124    |    -       144       154       164       174       184       194|        -  |    214       224       234       244
                                     15-MSE              35-MSE      47                          75-MSE                                               129          142                                                  195         207                                     
                                                            38-MSE                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:195
 aligned with Q9HXU4_PSEAE | Q9HXU4 from UniProtKB/TrEMBL  Length:248

    Alignment length:236
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      
         Q9HXU4_PSEAE     2 ASHELDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSAGKRKLGGESVFMTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATF 237
               SCOP domains d1yoxb_ B: Hypothetical protein PA3696                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....eeeeee....eeee....eeeee..eeee..---------------------------.eeeee.....eeeee.....eeeeeee.hhhh.eeeee...eeeee...eeeeeee....--------.eeeeee...eeeeeee..eeeeeeeeeeeeee...eeee...eeeeeee...------.....eeeeeeeeeeeeee..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yox B   2 ASHELDYRILGESmQTVEIELDPGETVIAEAGAmNYmTGDIRFTAR---------------------------mTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLG--------FILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAGG------GGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATF 237
                                    11   |    21        31   |  | 41     |   -         -         -   |    81        91       101       111       121       131   |     -  |    151       161       171       181       191    |    - |     211       221       231      
                                        15-MSE              35-MSE      47                          75-MSE                                                     135      144                                                 196    203                                  
                                                               38-MSE                                                                                                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:196
 aligned with Q9HXU4_PSEAE | Q9HXU4 from UniProtKB/TrEMBL  Length:248

    Alignment length:233
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234   
         Q9HXU4_PSEAE     5 ELDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSAGKRKLGGESVFMTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATF 237
               SCOP domains d1yoxc_ C: Hypothetical protein PA3696                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....eeeeee....eeee....eeee...eeee..---------------------------.eeeee.....eeeee.....eeeeeee.hhhh.eeeee...eeeee...eeeeeeee....hhhhh..eeeeeee...eeeeeee..eeeee...eeeeee...eeee...eeeeeee..----------..eeeeeee..eeeee..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yox C   5 ELDYRILGESmQTVEIELDPGETVIAEAGAmNYmTGDIRFTAR---------------------------mTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAG----------GLLLTTLKGSGTVWLQSLPFSRLAGRIYDATF 237
                                    14|       24        34|  |    44  |      -         -         -|       84        94       104       114       124       134       144       154       164       174       184       194|        - |     214       224       234   
                                     15-MSE              35-MSE      47                          75-MSE                                                                                                                 195        206                               
                                                            38-MSE                                                                                                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:209
 aligned with Q9HXU4_PSEAE | Q9HXU4 from UniProtKB/TrEMBL  Length:248

    Alignment length:236
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      
         Q9HXU4_PSEAE     2 ASHELDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSAGKRKLGGESVFMTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATF 237
               SCOP domains d1yoxd_ D: Hypothetical protein PA3696                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....eeeeee....eeee....eeeee..eeee..---------------------------.eeeee.....eeeee.....eeeeeee.hhhh.eeeee...eeeee...eeeeeeee...........eeeeeee...eeeeeee..eeeeeeeeeeeeee...eeee...eeeeeee..............eeeeeeeeeeeeee..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yox D   2 ASHELDYRILGESmQTVEIELDPGETVIAEAGAmNYmTGDIRFTAR---------------------------mTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAGGLKSmLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATF 237
                                    11   |    21        31   |  | 41     |   -         -         -   |    81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231      
                                        15-MSE              35-MSE      47                          75-MSE                                                                                                                      200-MSE                                 
                                                               38-MSE                                                                                                                                                                                                   


Chain E from PDB  Type:PROTEIN  Length:203
 aligned with Q9HXU4_PSEAE | Q9HXU4 from UniProtKB/TrEMBL  Length:248

    Alignment length:235
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232     
         Q9HXU4_PSEAE     3 SHELDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSAGKRKLGGESVFMTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATF 237
               SCOP domains d1yoxe_ E: Hypothetical protein PA3696                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.....eeeeee....eeee....eeee...eeeee...----------------------....eeeee.....eeeee.....eeeeeee.hhhh.eeeee...eeeee...eeeeeeee....hhhhh..eeeeeee...eeeeeee..eeeeeeeeeeeeee...eeee...eeeeeee.----------...eeeeeeeeeeeeee..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yox E   3 SHELDYRILGESmQTVEIELDPGETVIAEAGAmNYmTGDIRFTARmG----------------------SVFmTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLA----------EGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATF 237
                                    12  |     22        32  |  |  42     ||  -         -        72  |     82        92       102       112       122       132       142       152       162       172       182       192 |       -  |    212       222       232     
                                       15-MSE              35-MSE       48-MSE                  72  |                                                                                                                    194        205                                
                                                              38-MSE     49                        75-MSE                                                                                                                                                              


Chain F from PDB  Type:PROTEIN  Length:186
 aligned with Q9HXU4_PSEAE | Q9HXU4 from UniProtKB/TrEMBL  Length:248

    Alignment length:239
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233         
         Q9HXU4_PSEAE     4 HELDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSAGKRKLGGESVFMTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIAFTKRLGAGFFGGEGFILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGEGLLLTTLKGSGTVWLQSLPFSRLAGRIYDATFRAREE 242
               SCOP domains d1yoxf_ F: Hypothetical protein PA3696                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----AIM24-1yoxF01 F:8-224                                                                                                                                                                                                    ------------------ Pfam domains (1)
           Pfam domains (2) ----AIM24-1yoxF02 F:8-224                                                                                                                                                                                                    ------------------ Pfam domains (2)
           Pfam domains (3) ----AIM24-1yoxF03 F:8-224                                                                                                                                                                                                    ------------------ Pfam domains (3)
           Pfam domains (4) ----AIM24-1yoxF04 F:8-224                                                                                                                                                                                                    ------------------ Pfam domains (4)
           Pfam domains (5) ----AIM24-1yoxF05 F:8-224                                                                                                                                                                                                    ------------------ Pfam domains (5)
           Pfam domains (6) ----AIM24-1yoxF06 F:8-224                                                                                                                                                                                                    ------------------ Pfam domains (6)
         Sec.struct. author ...eeeee.....eeeeee....eeee....eeeee..eee...---------------------------.eeeee.....eeeee.......eeeee........eee...eeeee...eeee.--------------..eeeee...eeeee....eeeeeee...eeee...eeee...eeeeee..------------..eeeeeeeeeeeee..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yox F   4 HELDYRILGESmQTVEIELDPGETVIAEAGAmNYmTGDIRFTAR---------------------------mTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGGRLFCQKDSFLCAAYGTRVGIA--------------FILQKLEGDGLVFVHAGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLA------------LLLTTLKGSGTVWLQSLPFSRLAGRIYDATFRAREE 242
                                    13 |      23        33 |  |   43   |     -         -         - |      83        93       103       113       123     |   -         -|      153       163       173       183       193|        -   |   213       223       233         
                                      15-MSE              35-MSE      47                          75-MSE                                               129            144                                               194          207                                   
                                                             38-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1YOX)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: no clan defined [family: AIM24] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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