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(-) Description

Title :  SH3 DOMAIN OF YEAST PIN3
 
Authors :  P. Kursula, I. Kursula, P. Zou, F. Lehmann, Y. H. Song, M. Wilmanns
Date :  26 Jan 05  (Deposition) - 30 May 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Sh3 Domain, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Kursula, I. Kursula, P. Zou, F. Lehmann, Y. H. Song, M. Wilmanns
Structural Analysis Of The Yeast Sh3 Domain Proteome
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PIN3P
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainRIL
    Expression System Taxid562
    FragmentSH3 DOMAIN
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Exons   (1, 1)

Asymmetric/Biological Unit (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YPR154W1YPR154W.1XVI:834561-835208648PIN3_YEAST1-2152151A:1-5757

(-) Sequences/Alignments

Asymmetric/Biological Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:57
 aligned with PIN3_YEAST | Q06449 from UniProtKB/Swiss-Prot  Length:215

    Alignment length:57
                                    65        75        85        95       105       
           PIN3_YEAST    56 LEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPAF 112
               SCOP domains d1ynza_ A: automated matches                              SCOP domains
               CATH domains 1ynzA00 A:1-57 SH3 Domains                                CATH domains
               Pfam domains ----SH3_1-1ynzA01 A:5-50                          ------- Pfam domains
         Sec.struct. author ..eeee..................eeeeeee....eeeeee..eeeeee...eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: A:1-57 UniProt: 1-215 [INCOMPLETE]         Transcript 1
                 1ynz A   1 MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPAF  57
                                    10        20        30        40        50       

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: SH3 (175)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (PIN3_YEAST | Q06449)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0034316    negative regulation of Arp2/3 complex-mediated actin nucleation    Any process that stops, prevents, or reduces the frequency, rate or extent of actin nucleation mediated by the Arp2/3 complex and interacting proteins.
cellular component
    GO:0030479    actin cortical patch    An endocytic patch that consists of an actin-containing structure found at the plasma membrane in cells; formed of networks of branched actin filaments that lie just beneath the plasma membrane and assemble, move, and disassemble rapidly. An example of this is the actin cortical patch found in Saccharomyces cerevisiae.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PIN3_YEAST | Q064491zx6

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