1YNP - JenaLib

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Title :   ALDO-KETO REDUCTASE AKR11C1 FROM BACILLUS HALODURANS (APO FORM)

Authors :   T. Marquardt, D. Kostrewa, F. K. Winkler, X. D. Li

Date :   25 Jan 05 (Deposition) - 06 Dec 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.25

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Aldo-Keto Reductase, Akr11C1, Nadph, Bacillus Halodurans, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Marquardt, D. Kostrewa, R. Balakrishnan, A. Gasperina, C. Kambach A. Podjarny, F. K. Winkler, G. K. Balendiran, X. D. Li
High-Resolution Crystal Structure Of Akr11C1 From Bacillus Halodurans: An Nadph-Dependent 4-Hydroxy-2, 3-Trans-Nonenal Reductase
J. Mol. Biol. V. 354 304 2005
PubMed-ID: 16242712 | Reference-DOI: 10.1016/J.JMB.2005.09.067

Molecule 1 - OXIDOREDUCTASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	B834(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BH1011
	Organism Scientific	:	BACILLUS HALODURANS
	Organism Taxid	:	272558
	Strain	:	C-125
	Synonym	:	AKR11C1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 15)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	NA	1	Ligand/Ion	SODIUM ION
3	SO4	12	Ligand/Ion	SULFATE ION
4	SUC	1	Ligand/Ion	SUCROSE

Biological Unit 1 (3, 10)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	NA	-1	Ligand/Ion	SODIUM ION
3	SO4	8	Ligand/Ion	SULFATE ION
4	SUC	1	Ligand/Ion	SUCROSE

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	NA	-1	Ligand/Ion	SODIUM ION
3	SO4	4	Ligand/Ion	SULFATE ION
4	SUC	-1	Ligand/Ion	SUCROSE

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:217 , ARG A:219 , GLU A:222 , LYS A:288 , HOH A:334 , HOH A:367 , HOH A:467 , LYS B:3 , ASN B:43 , ASP B:70 , ILE B:71 , SO4 B:299 , HOH B:415	BINDING SITE FOR RESIDUE SUC A 298
02	AC2	SOFTWARE	GLU A:181 , HOH A:342 , LYS B:138 , GLY B:141 , ILE B:143	BINDING SITE FOR RESIDUE NA A 299
03	AC3	SOFTWARE	GLY A:197 , PRO A:198 , VAL A:199 , ALA A:200 , ARG A:201 , ALA A:255 , GLY A:256 , HOH A:325 , HOH A:352 , LYS B:85	BINDING SITE FOR RESIDUE SO4 A 300
04	AC4	SOFTWARE	LYS A:285 , ARG B:4 , GLN B:5 , HOH B:376 , HOH B:383 , HOH B:460 , HOH B:563	BINDING SITE FOR RESIDUE SO4 B 298
05	AC5	SOFTWARE	LYS A:288 , SUC A:298 , LYS B:3 , HIS B:12 , HOH B:322 , HOH B:335 , HOH B:402	BINDING SITE FOR RESIDUE SO4 B 299
06	AC6	SOFTWARE	ARG A:152 , HOH A:425 , HOH A:427 , ASN B:154 , HIS B:295 , HOH B:316 , HOH B:401 , HOH B:438	BINDING SITE FOR RESIDUE SO4 A 301
07	AC7	SOFTWARE	SER A:150 , ILE A:151 , ARG A:152 , HOH A:327 , HOH A:340 , HOH A:362 , HOH A:398 , HOH A:524	BINDING SITE FOR RESIDUE SO4 A 302
08	AC8	SOFTWARE	ILE A:123 , ASN A:154 , HIS A:295 , HOH A:324 , HOH A:554 , HOH A:555	BINDING SITE FOR RESIDUE SO4 A 303
09	AC9	SOFTWARE	LYS A:65 , ASP A:125 , PRO A:126 , ILE A:127 , ASP A:128 , ARG A:162 , HOH A:323 , HOH A:456 , HOH A:473	BINDING SITE FOR RESIDUE SO4 A 304
10	BC1	SOFTWARE	ARG A:206 , PRO A:235 , LEU A:236 , HOH A:365 , HOH A:430 , ARG B:206 , PRO B:235 , LEU B:236 , HOH B:349 , HOH B:553	BINDING SITE FOR RESIDUE SO4 B 300
11	BC2	SOFTWARE	ALA A:246 , HIS A:247 , ASP A:248 , ARG A:280 , HOH A:350 , HOH A:464 , HOH A:488	BINDING SITE FOR RESIDUE SO4 A 305
12	BC3	SOFTWARE	SER A:22 , GLN A:53	BINDING SITE FOR RESIDUE SO4 A 306
13	BC4	SOFTWARE	ARG A:219 , HOH A:329 , HOH A:354 , HOH A:358 , HOH A:466 , HOH A:569 , HOH A:570	BINDING SITE FOR RESIDUE SO4 A 307
14	BC5	SOFTWARE	GLN B:58 , ARG B:106 , ARG B:107 , HOH B:575 , HOH B:581	BINDING SITE FOR RESIDUE SO4 B 301
15	BC6	SOFTWARE	VAL A:199 , GLY A:202 , SER A:205 , ARG A:207 , GLN A:262 , HOH A:400 , LYS B:85 , HOH B:413	BINDING SITE FOR RESIDUE GOL A 308

(no "SS Bond" information available for 1YNP)

(no "Cis Peptide Bond" information available for 1YNP)

(no "SAP(SNP)/Variant" information available for 1YNP)

(no "PROSITE Motif" information available for 1YNP)

(no "Exon" information available for 1YNP)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:283
 aligned with Q9KE47_BACHD | Q9KE47 from UniProtKB/TrEMBL  Length:297

    Alignment length:298
                             1                                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289        
         Q9KE47_BACHD     - -MKKRQLGTSDLHVSELGFGCMSLGTDETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKVGNRFEQGKEGWWWDPSKAYIKEAVKDSLRRLQTDYIDLYQLHGGTIDDPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRPLPEGEGYLNYRYDELKLLRESLPTDRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEATPLTAEERQHIQKLAKAAVYEQHRE 297
               SCOP domains d1ynpa_ A: automated matches                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee......eee...........hhhhhhhhhhhhhhh...eee.........hhhhhhhhhh.hhhhheeeeee---------------hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhh..eeeee..hhhhh...............hhhhhhhhhhhh....hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh....hhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ynp A  -1 HMKKRQLGTSDLHVSELGFGCMSLGTDETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKV---------------SKAYIKEAVKDSLRRLQTDYIDLYQLHGGTIDDPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRPLPEGEGYLNYRYDELKLLRESLPTDRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEATPLTAEERQHIQKLAKAAVYEQHRE 297
                            ||       9        19        29        39        49        59        69       | -         -   |    99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289        
                            ||                                                                          77              93                                                                                                                                                                                                            
                           -1|                                                                                                                                                                                                                                                                                                        
                             1

Chain B from PDB  Type:PROTEIN  Length:298
 aligned with Q9KE47_BACHD | Q9KE47 from UniProtKB/TrEMBL  Length:297

    Alignment length:298
                             1                                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289        
         Q9KE47_BACHD     - -MKKRQLGTSDLHVSELGFGCMSLGTDETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKVGNRFEQGKEGWWWDPSKAYIKEAVKDSLRRLQTDYIDLYQLHGGTIDDPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRPLPEGEGYLNYRYDELKLLRESLPTDRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEATPLTAEERQHIQKLAKAAVYEQHRE 297
               SCOP domains d1ynpb_ B: automated matches                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------Aldo_ket_red-1ynpB01 B:15-288                                                                                                                                                                                                                                                     --------- Pfam domains (1)
           Pfam domains (2) ---------------Aldo_ket_red-1ynpB02 B:15-288                                                                                                                                                                                                                                                     --------- Pfam domains (2)
         Sec.struct. author ...eee......eee.eeee.hhhh.hhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhhhhh......eeeeee.ee........ee..hhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhh..eeeee......................hhhhhhhhhhhh....hhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhh....hhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ynp B  -1 HMKKRQLGTSDLHVSELGFGCMSLGTDETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKVGNRFEQGKEGWWWDPSKAYIKEAVKDSLRRLQTDYIDLYQLHGGTIDDPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRPLPEGEGYLNYRYDELKLLRESLPTDRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEATPLTAEERQHIQKLAKAAVYEQHRE 297
                            ||       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289        
                           -1|                                                                                                                                                                                                                                                                                                        
                             1

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: NAD(P)-linked oxidoreductase (286)

Family: automated matches (35)

Protein domain: automated matches (35)

Bacillus halodurans [TaxId: 272558] (2)

1a	d1ynpa_	A:
1b	d1ynpb_	B:

(no "CATH Domain" information available for 1YNP)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Aldo_ket_red] (94)

Family: Aldo_ket_red (94)

Bacillus halodurans (2)

1a	Aldo_ket_red-1ynpB01	B:15-288
1b	Aldo_ket_red-1ynpB02	B:15-288

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q9KE47_BACHD | Q9KE47)

molecular function
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
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	Cis Peptide Bonds
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Biological Units
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	Q9KE47_BACHD \| Q9KE47	:	1ynq

1ynq	THE SAME PROTEIN WITH BOUND COFACTOR NADPH

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 15)

Sites (15, 15)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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