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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION (POSSIBLE AMINOPEPTIDASE) S2589 FROM SHIGELLA FLEXNERI 2A STR. 2457T
 
Authors :  B. P. Nocek, Midwest Center For Structural Genomics (Mcsg)
Date :  19 Jan 05  (Deposition) - 08 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (2x)
Keywords :  Structural Genomics, Mcsg, Hypothetical Protein S2589, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. P. Nocek, A. Binkowski, H. Li, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Crystal Structure Of Hypothetical Protein From Shigella Flexneri 2A.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN SF2450
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET15B
    Organism Scientific: SHIGELLA FLEXNERI 2A STR. 2457T
    Organism Taxid: 198215
    Strain: 2A STR. 2457T

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (2x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 84)

Asymmetric Unit (2, 84)
No.NameCountTypeFull Name
1MSE72Mod. Amino AcidSELENOMETHIONINE
2ZN12Ligand/IonZINC ION
Biological Unit 1 (1, 144)
No.NameCountTypeFull Name
1MSE144Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:62 , ASP A:166 , ASP A:221 , ZN A:1447 , HOH A:1448BINDING SITE FOR RESIDUE ZN A 1446
02AC2SOFTWAREASP A:166 , GLU A:199 , HIS A:308 , ZN A:1446 , HOH A:1448BINDING SITE FOR RESIDUE ZN A 1447
03AC3SOFTWAREHIS B:62 , ASP B:166 , ASP B:221 , ZN B:1547 , HOH B:1570 , HOH B:1605BINDING SITE FOR RESIDUE ZN B 1546
04AC4SOFTWAREASP B:166 , GLU B:199 , HIS B:308 , ZN B:1546 , HOH B:1570BINDING SITE FOR RESIDUE ZN B 1547
05AC5SOFTWAREHIS C:62 , ASP C:166 , ASP C:221 , ZN C:1647 , HOH C:1690BINDING SITE FOR RESIDUE ZN C 1646
06AC6SOFTWAREASP C:166 , GLU C:199 , HIS C:308 , ZN C:1646 , HOH C:1690BINDING SITE FOR RESIDUE ZN C 1647
07AC7SOFTWAREHIS D:62 , ASP D:166 , ASP D:221 , ZN D:1747 , HOH D:1820BINDING SITE FOR RESIDUE ZN D 1746
08AC8SOFTWAREASP D:166 , GLU D:199 , HIS D:308 , ZN D:1746 , HOH D:1820BINDING SITE FOR RESIDUE ZN D 1747
09AC9SOFTWAREHIS E:62 , ASP E:166 , GLU E:198 , ASP E:221 , ZN E:1847 , HOH E:1852 , HOH E:1931BINDING SITE FOR RESIDUE ZN E 1846
10BC1SOFTWAREASP E:166 , GLU E:199 , HIS E:308 , ZN E:1846 , HOH E:1852BINDING SITE FOR RESIDUE ZN E 1847
11BC2SOFTWAREHIS F:62 , ASP F:166 , GLU F:198 , ASP F:221 , ZN F:1947 , HOH F:1948BINDING SITE FOR RESIDUE ZN F 1946
12BC3SOFTWAREASP F:166 , GLU F:199 , HIS F:308 , ZN F:1946 , HOH F:1948BINDING SITE FOR RESIDUE ZN F 1947

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YLO)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asp A:166 -Asp A:167
2Asp B:166 -Asp B:167
3Asp C:166 -Asp C:167
4Asp D:166 -Asp D:167
5Asp E:166 -Asp E:167
6Asp F:166 -Asp F:167

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YLO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YLO)

(-) Exons   (0, 0)

(no "Exon" information available for 1YLO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:346
 aligned with Q83K87_SHIFL | Q83K87 from UniProtKB/TrEMBL  Length:345

    Alignment length:346
                             1                                                                                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339      
         Q83K87_SHIFL     - -MDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARTYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTLVMGPATRHGHCAASIADCRDILQMEQLLSALIQRLTRETVVQLTDFR 345
               SCOP domains -d1yloa2 A:1-66,A:148-345 Aminopeptidase YpdE                      d1yloa1 A:67-147 Aminopeptidase YpdE                                             d1yloa2 A:1-66,A:148-345 Aminopeptidase YpdE                                                                                                                                                           SCOP domains
               CATH domains 1yloA01 A:0-66,A:149-345 Zn peptidases                             1yloA02 A:67-148 Aminopeptidase/glucanase lid domain; domain 2                    1yloA01 A:0-66,A:149-345 Zn peptidases                                                                                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhhhhhhhhh...eee.....eeee.......eeeeeee....eeeeeee.....eeeeee...hhhhh..eeeeee.....eeeeeeeeeee..eeeeeeee....hhhhhhhh......eeee....eee...eeee.hhhhhhhhhhhhhhhhhhh......eeeeeee......hhhhhhhhhhhh..eeeee.......................eeeee......hhhhhhhhhhhhhhhh...eeee......hhhhhhh......eeeee..........eeeehhhhhhhhhhhhhhhhh.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ylo A   0 AmDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVmICAHmDEVGFmVRSISREGAIDVLPVGNVRmAARQLQPVRITTREECKIPGLLDGDRQGNDVSAmRVDIGARTYDEVmQAGIRPGDRVTFDTTFQVLPHQRVmGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPmLVLSDKSLIAPPKLTAWIETVAAEIGVPLQADmFSNGGTDGGAVHLTGTGVPTLVmGPATRHGHCAASIADCRDILQmEQLLSALIQRLTRETVVQLTDFR 345
                             |       9        19        29        39        49        59   |    69        79        89        99       109       119   |   129      |139       149       159 |     169       179       189       199       209       219       229       239    |  249       259       269       279       289       299|      309       319  |    329       339      
                             |                                                       58-MSE|     |                  89-MSE                           123-MSE      136-MSE                  161-MSE                                                                            244-MSE                          277-MSE                300-MSE               322-MSE                   
                             1-MSE                                                        63-MSE |                                                                                                                                                                                                                                                                                    
                                                                                                69-MSE                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:346
 aligned with Q83K87_SHIFL | Q83K87 from UniProtKB/TrEMBL  Length:345

    Alignment length:346
                             1                                                                                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339      
         Q83K87_SHIFL     - -MDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARTYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTLVMGPATRHGHCAASIADCRDILQMEQLLSALIQRLTRETVVQLTDFR 345
               SCOP domains d1ylob2 B:0-66,B:148-345 Aminopeptidase YpdE                       d1ylob1 B:67-147 Aminopeptidase YpdE                                             d1ylob2 B:0-66,B:148-345 Aminopeptidase YpdE                                                                                                                                                           SCOP domains
               CATH domains 1yloB01 B:0-66,B:149-345 Zn peptidases                             1yloB02 B:67-148 Aminopeptidase/glucanase lid domain; domain 2                    1yloB01 B:0-66,B:149-345 Zn peptidases                                                                                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhhhhhhhhh...eee.....eeee.......eeeeeee....eeeeeee.....eeeeee...hhhhh..eeeeee.....eeeeeeeeeee..eeeeeeee....hhhhhhhh......eeee....eee...eeee.hhhhhhhhhhhhhhhhhhh......eeeeeee.......hhhhhhhhhhh..eeeee.......................eeeee......hhhhhhhhhhhhhhhh...eeee......hhhhhhh......eeeee..........eeeehhhhhhhhhhhhhhhh..hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ylo B   0 AmDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVmICAHmDEVGFmVRSISREGAIDVLPVGNVRmAARQLQPVRITTREECKIPGLLDGDRQGNDVSAmRVDIGARTYDEVmQAGIRPGDRVTFDTTFQVLPHQRVmGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPmLVLSDKSLIAPPKLTAWIETVAAEIGVPLQADmFSNGGTDGGAVHLTGTGVPTLVmGPATRHGHCAASIADCRDILQmEQLLSALIQRLTRETVVQLTDFR 345
                             |       9        19        29        39        49        59   |    69        79        89        99       109       119   |   129      |139       149       159 |     169       179       189       199       209       219       229       239    |  249       259       269       279       289       299|      309       319  |    329       339      
                             1-MSE                                                   58-MSE|     |                  89-MSE                           123-MSE      136-MSE                  161-MSE                                                                            244-MSE                          277-MSE                300-MSE               322-MSE                   
                                                                                          63-MSE |                                                                                                                                                                                                                                                                                    
                                                                                                69-MSE                                                                                                                                                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:346
 aligned with Q83K87_SHIFL | Q83K87 from UniProtKB/TrEMBL  Length:345

    Alignment length:346
                             1                                                                                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339      
         Q83K87_SHIFL     - -MDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARTYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTLVMGPATRHGHCAASIADCRDILQMEQLLSALIQRLTRETVVQLTDFR 345
               SCOP domains d1yloc2 C:0-66,C:148-345 Aminopeptidase YpdE                       d1yloc1 C:67-147 Aminopeptidase YpdE                                             d1yloc2 C:0-66,C:148-345 Aminopeptidase YpdE                                                                                                                                                           SCOP domains
               CATH domains 1yloC01 C:0-66,C:149-345 Zn peptidases                             1yloC02 C:67-148 Aminopeptidase/glucanase lid domain; domain 2                    1yloC01 C:0-66,C:149-345 Zn peptidases                                                                                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhhhhhhhhh...eee.....eeee.......eeeeeee....eeeeeee.....eeeeee...hhhhh..eeeeee.....eeeeeeeeeee..eeeeeeee....hhhhhhhh......eeee....eee...eeee.hhhhhhhhhhhhhhhhhhh......eeeeeee......hhhhhhhhhhhh..eeeee.......................eeeee......hhhhhhhhhhhhhhhh...eeee.....hhhhhhhh......eeeee..........eeeehhhhhhhhhhhhhhhhh.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ylo C   0 AmDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVmICAHmDEVGFmVRSISREGAIDVLPVGNVRmAARQLQPVRITTREECKIPGLLDGDRQGNDVSAmRVDIGARTYDEVmQAGIRPGDRVTFDTTFQVLPHQRVmGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPmLVLSDKSLIAPPKLTAWIETVAAEIGVPLQADmFSNGGTDGGAVHLTGTGVPTLVmGPATRHGHCAASIADCRDILQmEQLLSALIQRLTRETVVQLTDFR 345
                             |       9        19        29        39        49        59   |    69        79        89        99       109       119   |   129      |139       149       159 |     169       179       189       199       209       219       229       239    |  249       259       269       279       289       299|      309       319  |    329       339      
                             1-MSE                                                   58-MSE|     |                  89-MSE                           123-MSE      136-MSE                  161-MSE                                                                            244-MSE                          277-MSE                300-MSE               322-MSE                   
                                                                                          63-MSE |                                                                                                                                                                                                                                                                                    
                                                                                                69-MSE                                                                                                                                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:346
 aligned with Q83K87_SHIFL | Q83K87 from UniProtKB/TrEMBL  Length:345

    Alignment length:346
                             1                                                                                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339      
         Q83K87_SHIFL     - -MDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARTYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTLVMGPATRHGHCAASIADCRDILQMEQLLSALIQRLTRETVVQLTDFR 345
               SCOP domains d1ylod2 D:0-66,D:148-345 Aminopeptidase YpdE                       d1ylod1 D:67-147 Aminopeptidase YpdE                                             d1ylod2 D:0-66,D:148-345 Aminopeptidase YpdE                                                                                                                                                           SCOP domains
               CATH domains 1yloD01 D:0-66,D:149-345 Zn peptidases                             1yloD02 D:67-148 Aminopeptidase/glucanase lid domain; domain 2                    1yloD01 D:0-66,D:149-345 Zn peptidases                                                                                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhhhhhhhhh...eee.....eeee.......eeeeeee....eeeeeee.....eeeeee...hhhhh..eeeeee.....eeeeeeeeeee..eeeeeeee....hhhhhhhh......eeee....eee...eeee.hhhhhhhhhhhhhhhhhhh......eeeeeee.hhhhh.hhhhhhhhhhh..eeeee.......................eeeee......hhhhhhhhhhhhhhhh...eeee......hhhhhhh......eeeee..........eeeehhhhhhhhhhhhhhhhh.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ylo D   0 AmDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVmICAHmDEVGFmVRSISREGAIDVLPVGNVRmAARQLQPVRITTREECKIPGLLDGDRQGNDVSAmRVDIGARTYDEVmQAGIRPGDRVTFDTTFQVLPHQRVmGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPmLVLSDKSLIAPPKLTAWIETVAAEIGVPLQADmFSNGGTDGGAVHLTGTGVPTLVmGPATRHGHCAASIADCRDILQmEQLLSALIQRLTRETVVQLTDFR 345
                             |       9        19        29        39        49        59   |    69        79        89        99       109       119   |   129      |139       149       159 |     169       179       189       199       209       219       229       239    |  249       259       269       279       289       299|      309       319  |    329       339      
                             1-MSE                                                   58-MSE|     |                  89-MSE                           123-MSE      136-MSE                  161-MSE                                                                            244-MSE                          277-MSE                300-MSE               322-MSE                   
                                                                                          63-MSE |                                                                                                                                                                                                                                                                                    
                                                                                                69-MSE                                                                                                                                                                                                                                                                                


Chain E from PDB  Type:PROTEIN  Length:346
 aligned with Q83K87_SHIFL | Q83K87 from UniProtKB/TrEMBL  Length:345

    Alignment length:346
                             1                                                                                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339      
         Q83K87_SHIFL     - -MDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARTYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTLVMGPATRHGHCAASIADCRDILQMEQLLSALIQRLTRETVVQLTDFR 345
               SCOP domains d1yloe2 E:0-66,E:148-345 Aminopeptidase YpdE                       d1yloe1 E:67-147 Aminopeptidase YpdE                                             d1yloe2 E:0-66,E:148-345 Aminopeptidase YpdE                                                                                                                                                           SCOP domains
               CATH domains 1yloE01 E:0-66,E:151-345 Zn peptidases                             1yloE02 E:67-150 Aminopeptidase/glucanase lid domain; domain 2                      1yloE01 E:0-66,E:151-345 Zn peptidases                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhhhhhhhhh...eee.....eeee.......eeeeeee....eeeeeee.....eeeeee...hhhhh..eeeeee.....eeeeeeeeeee..eeeeeeee....hhhhhhhh......eeee....eee...eeee.hhhhhhhhhhhhhhhhhhh......eeeeeee......hhhhhhhhhhhh..eeeee.......................eeeee......hhhhhhhhhhhhhhhh...eeee......hhhhhhh......eeeee..........eeeehhhhhhhhhhhhhhhhh.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ylo E   0 AmDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVmICAHmDEVGFmVRSISREGAIDVLPVGNVRmAARQLQPVRITTREECKIPGLLDGDRQGNDVSAmRVDIGARTYDEVmQAGIRPGDRVTFDTTFQVLPHQRVmGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPmLVLSDKSLIAPPKLTAWIETVAAEIGVPLQADmFSNGGTDGGAVHLTGTGVPTLVmGPATRHGHCAASIADCRDILQmEQLLSALIQRLTRETVVQLTDFR 345
                             |       9        19        29        39        49        59   |    69        79        89        99       109       119   |   129      |139       149       159 |     169       179       189       199       209       219       229       239    |  249       259       269       279       289       299|      309       319  |    329       339      
                             1-MSE                                                   58-MSE|     |                  89-MSE                           123-MSE      136-MSE                  161-MSE                                                                            244-MSE                          277-MSE                300-MSE               322-MSE                   
                                                                                          63-MSE |                                                                                                                                                                                                                                                                                    
                                                                                                69-MSE                                                                                                                                                                                                                                                                                


Chain F from PDB  Type:PROTEIN  Length:346
 aligned with Q83K87_SHIFL | Q83K87 from UniProtKB/TrEMBL  Length:345

    Alignment length:346
                             1                                                                                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339      
         Q83K87_SHIFL     - -MDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARTYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTLVMGPATRHGHCAASIADCRDILQMEQLLSALIQRLTRETVVQLTDFR 345
               SCOP domains d1ylof2 F:0-66,F:148-345 Aminopeptidase YpdE                       d1ylof1 F:67-147 Aminopeptidase YpdE                                             d1ylof2 F:0-66,F:148-345 Aminopeptidase YpdE                                                                                                                                                           SCOP domains
               CATH domains 1yloF01 F:0-66,F:149-345 Zn peptidases                             1yloF02 F:67-148 Aminopeptidase/glucanase lid domain; domain 2                    1yloF01 F:0-66,F:149-345 Zn peptidases                                                                                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhhhhhhhhh...eee.....eeee.......eeeeeee....eeeeeee.....eeeeee...hhhhh..eeeeee.....eeeeeeeeeee..eeeeeeee....hhhhhhhh......eeee....eee...eeee.hhhhhhhhhhhhhhhhhhh......eeeeeee.hhhhhhhhhhhhhhhhh..eeeee.......................eeeee......hhhhhhhhhhhhhhhh...eeee.....hhhhhhhh......eeeee..........eeeehhhhhhhhhhhhhhhhh.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ylo F   0 AmDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGSVLIRLNESTGPKVmICAHmDEVGFmVRSISREGAIDVLPVGNVRmAARQLQPVRITTREECKIPGLLDGDRQGNDVSAmRVDIGARTYDEVmQAGIRPGDRVTFDTTFQVLPHQRVmGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPmLVLSDKSLIAPPKLTAWIETVAAEIGVPLQADmFSNGGTDGGAVHLTGTGVPTLVmGPATRHGHCAASIADCRDILQmEQLLSALIQRLTRETVVQLTDFR 345
                             |       9        19        29        39        49        59   |    69        79        89        99       109       119   |   129      |139       149       159 |     169       179       189       199       209       219       229       239    |  249       259       269       279       289       299|      309       319  |    329       339      
                             1-MSE                                                   58-MSE|     |                  89-MSE                           123-MSE      136-MSE                  161-MSE                                                                            244-MSE                          277-MSE                300-MSE               322-MSE                   
                                                                                          63-MSE |                                                                                                                                                                                                                                                                                    
                                                                                                69-MSE
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 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: Phosphorylase/hydrolase-like (558)
(-)
Superfamily: Zn-dependent exopeptidases (214)
(-)
Family: Bacterial dinuclear zinc exopeptidases (55)
(-)
Protein domain: Aminopeptidase YpdE (1)
(-)
Shigella flexneri [TaxId: 623] (1)
2ad1yloa2A:1-66,A:148-345
2bd1ylob2B:0-66,B:148-345
2cd1yloc2C:0-66,C:148-345
2dd1ylod2D:0-66,D:148-345
2ed1yloe2E:0-66,E:148-345
2fd1ylof2F:0-66,F:148-345

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Aminopeptidase (284)
(-)
Homologous Superfamily: Zn peptidases (137)
(-)
2457t (Shigella flexneri 2a str) (1)
1a1yloA01A:0-66,A:149-345
1b1yloB01B:0-66,B:149-345
1c1yloC01C:0-66,C:149-345
1d1yloD01D:0-66,D:149-345
1e1yloF01F:0-66,F:149-345
1f1yloE01E:0-66,E:151-345
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1YLO)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q83K87_SHIFL | Q83K87)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1YLO)

(-) Related Entries Specified in the PDB File

1vhe RELATED ID: APC27836 RELATED DB: TARGETDB