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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CONSERVED PROTEIN OF UNKNOWN FUNCTION PA5104 FROM PSEUDOMONAS AERUGINOSA PAO1
 
Authors :  Midwest Center For Structural Genomics (Mcsg)
Date :  19 Jan 05  (Deposition) - 01 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.64
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Conserved Hypothetical Protein, Structural Genomics, Beta-Barrels, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, A. Joachimiak, T. Skarina, A. Savchenko, A. Edwards
Crystal Structure Of The Conserved Hypothetical Protein Pa5104 From Pseudomonas Aeruginosa Pao1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: MODIFIED PET15B
    Expression System Strain: BL21DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PAO1
    Synonym: PA5104

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1YLL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YLL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YLL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YLL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YLL)

(-) Exons   (0, 0)

(no "Exon" information available for 1YLL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:190
 aligned with Q9HU79_PSEAE | Q9HU79 from UniProtKB/TrEMBL  Length:196

    Alignment length:195
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191     
         Q9HU79_PSEAE     2 SELRILRAVDYPRMPWKNGAGSTEEIARDGGDGLDGFGWRLSIADVGESGGFSGFAGYQRIISVLEGGGMRLRVDGAESAPLRARQAFAFSGDSEVHCTLLDGAIRDFNLIYAPRRHRARLQWLRVEGELDWHGTASTLLLFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQGLQHWRLTAHEPAWVCAVELDSL 196
               SCOP domains d1ylla1 A:2-196      Hypothetical protein PA5104                                                                                                                                                    SCOP domains
               CATH domains 1yllA01    1yll     A02 A:13-115 Jelly Rolls                                                                      1yllA01 A:2-12,A:116-196 Jelly Rolls                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeehhhhh.ee.-----.eeeeeee...hhhhh..eeeeeeee...eee......eeeeeeee...eeeee..ee.........eeee....eeeee....eeeeeeee....eeeeeeeeeeeeeeeeee...eeeeee....eeeee..eeeeee....eeeee.....eeeeeeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yll A   2 SELRILRAVDYPRmP-----GSTEEIARDGGDGLDGFGWRLSIADVGESGGFSGFAGYQRIISVLEGGGmRLRVDGAESAPLRARQAFAFSGDSEVHCTLLDGAIRDFNLIYAPRRHRARLQWLRVEGELDWHGTASTLLLFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQGLQHWRLTAHEPAWVCAVELDSL 196
                                    11   ||    -|       31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191     
                                        15-MSE 22                                               71-MSE                                                                                                                         
                                         16                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:189
 aligned with Q9HU79_PSEAE | Q9HU79 from UniProtKB/TrEMBL  Length:196

    Alignment length:195
                                                                                                                                                                                                                           196 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192   | 
         Q9HU79_PSEAE     3 ELRILRAVDYPRMPWKNGAGSTEEIARDGGDGLDGFGWRLSIADVGESGGFSGFAGYQRIISVLEGGGMRLRVDGAESAPLRARQAFAFSGDSEVHCTLLDGAIRDFNLIYAPRRHRARLQWLRVEGELDWHGTASTLLLFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQGLQHWRLTAHEPAWVCAVELDSL-   -
               SCOP domains d1yllb_ B: automated matches                                                                                                                                                                        SCOP domains
               CATH domains 1yllB01   1yllB02 B:13-115 J      elly Rolls                                                                     1yllB01 B:3-12,B:116-197 Jelly Rolls                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeehhhhh.eee.....eeeeeeee.------...eeeeeeee...ee.......eeeeeeee...eeeee..ee.........eeee....eeeee....eeeeeeee....eeeeeeeeeeeeeeeeee...eeeeee....eeeee..eeeeee....eeee......eeeeeeeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yll B   3 ELRILRAVDYPRmPWKNGAGSTEEIARD------GFGWRLSIADVGESGGFSGFAGYQRIISVLEGGGmRLRVDGAESAPLRARQAFAFSGDSEVHCTLLDGAIRDFNLIYAPRRHRARLQWLRVEGELDWHGTASTLLLFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQGLQHWRLTAHEPAWVCAVELDSLG 197
                                    12  |     22       | -    |   42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192     
                                       15-MSE         30     37                                71-MSE                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:194
 aligned with Q9HU79_PSEAE | Q9HU79 from UniProtKB/TrEMBL  Length:196

    Alignment length:194
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    
         Q9HU79_PSEAE     2 SELRILRAVDYPRMPWKNGAGSTEEIARDGGDGLDGFGWRLSIADVGESGGFSGFAGYQRIISVLEGGGMRLRVDGAESAPLRARQAFAFSGDSEVHCTLLDGAIRDFNLIYAPRRHRARLQWLRVEGELDWHGTASTLLLFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQGLQHWRLTAHEPAWVCAVELDS 195
               SCOP domains d1yllc_ C: automated matches                                                                                                                                                                       SCOP domains
               CATH domains 1yllC011yllC02 C:9-117 Jelly Rolls                                                                                  1yllC01 C:2-8,C:118-195 Jelly Rolls                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeehhhhh..ee.....eeeeeeee..........eeeeeeee...eee......eeeeeeee...eeeee..ee.........eeee....eeeee....eeeeeeee.....eeeeeeeeeeeeeeeee...eeeeee....eeeee..eeeeee....eeeee.....eeeeeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yll C   2 SELRILRAVDYPRmPWKNGAGSTEEIARDGGDGLDGFGWRLSIADVGESGGFSGFAGYQRIISVLEGGGmRLRVDGAESAPLRARQAFAFSGDSEVHCTLLDGAIRDFNLIYAPRRHRARLQWLRVEGELDWHGTASTLLLFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQGLQHWRLTAHEPAWVCAVELDS 195
                                    11   |    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191    
                                        15-MSE                                                  71-MSE                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:195
 aligned with Q9HU79_PSEAE | Q9HU79 from UniProtKB/TrEMBL  Length:196

    Alignment length:195
                                                                                                                                                                                                                           196 
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192   | 
         Q9HU79_PSEAE     3 ELRILRAVDYPRMPWKNGAGSTEEIARDGGDGLDGFGWRLSIADVGESGGFSGFAGYQRIISVLEGGGMRLRVDGAESAPLRARQAFAFSGDSEVHCTLLDGAIRDFNLIYAPRRHRARLQWLRVEGELDWHGTASTLLLFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQGLQHWRLTAHEPAWVCAVELDSL-   -
               SCOP domains d1ylld_ D: automated matches                                                                                                                                                                        SCOP domains
               CATH domains 1yllD01   1yllD02 D:13-115 Jelly Rolls                                                                           1yllD01 D:3-12,D:116-197 Jelly Rolls                                               CATH domains
           Pfam domains (1) ----HutD-1yllD01 D:7-193                                                                                                                                                                       ---- Pfam domains (1)
           Pfam domains (2) ----HutD-1yllD02 D:7-193                                                                                                                                                                       ---- Pfam domains (2)
           Pfam domains (3) ----HutD-1yllD03 D:7-193                                                                                                                                                                       ---- Pfam domains (3)
           Pfam domains (4) ----HutD-1yllD04 D:7-193                                                                                                                                                                       ---- Pfam domains (4)
         Sec.struct. author .eeeehhhhh..ee.....eeeeeeee...hhhhh..eeeeeeee...eee......eeeeeeee...eeeee..ee.........eeee....eeeee....eeeeeeee....eeeeeeeeeeeeeeeeee...eeeeee....eeeee..eeeeee....eeee......eeeeeeeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yll D   3 ELRILRAVDYPRmPWKNGAGSTEEIARDGGDGLDGFGWRLSIADVGESGGFSGFAGYQRIISVLEGGGmRLRVDGAESAPLRARQAFAFSGDSEVHCTLLDGAIRDFNLIYAPRRHRARLQWLRVEGELDWHGTASTLLLFAQQDGVAISLQGQPRGQLAAHDCLCAEGLQGLQHWRLTAHEPAWVCAVELDSLG 197
                                    12  |     22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192     
                                       15-MSE                                                  71-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Jelly Rolls (1293)
(-)
Homologous Superfamily: Jelly Rolls (177)
(-)
Pseudomonas aeruginosa pao1. Organism_taxid: 208964. Strain: pao1. (1)
1a1yllC02C:9-117
1b1yllD02D:13-115
1c1yllA02A:13-115
1d1yllB02B:13-115
1e1yllA01A:2-12,A:116-196
1f1yllB01B:3-12,B:116-197
1g1yllD01D:3-12,D:116-197
1h1yllC01C:2-8,C:118-195

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: Cupin (179)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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