1YIW - JenaLib

Asymmetric Unit (2, 20)

No.	Name	Count	Type	Full Name
1	CD	17	Ligand/Ion	CADMIUM ION
2	CL	3	Ligand/Ion	CHLORIDE ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 6 (0, 0)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 7 (0, 0)

No.	Name	Count	Type	Full Name
1	CD	-1	Ligand/Ion	CADMIUM ION
2	CL	-1	Ligand/Ion	CHLORIDE ION

Sites (20, 20)

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CL A:92 , HOH A:95 , CL B:93 , HOH B:96 , CL C:91 , HOH C:94	BINDING SITE FOR RESIDUE CD A 90
02	AC2	SOFTWARE	SER A:20 , ASP A:21 , CD A:90 , ASN C:25	BINDING SITE FOR RESIDUE CL C 91
03	AC3	SOFTWARE	ASN A:25 , CD A:90 , SER B:20	BINDING SITE FOR RESIDUE CL A 92
04	AC4	SOFTWARE	CD A:90 , ASN B:25 , SER C:20 , ASP C:21	BINDING SITE FOR RESIDUE CL B 93
05	AC5	SOFTWARE	ASP A:21 , HOH A:102 , HOH A:103 , GLU B:18	BINDING SITE FOR RESIDUE CD A 101
06	AC6	SOFTWARE	GLU A:24 , ASP A:52 , HOH A:105 , HOH A:106 , HOH A:107	BINDING SITE FOR RESIDUE CD A 104
07	AC7	SOFTWARE	HIS A:68 , HOH A:109 , HOH A:110 , HOH A:111 , HOH A:112 , HOH A:113	BINDING SITE FOR RESIDUE CD A 108
08	AC8	SOFTWARE	ASP A:58 , HOH A:115 , HOH A:116 , HOH A:117 , HOH A:118	BINDING SITE FOR RESIDUE CD A 114
09	AC9	SOFTWARE	HIS A:68 , HOH A:120 , HOH A:122 , HOH A:123 , HOH A:124	BINDING SITE FOR RESIDUE CD A 119
10	BC1	SOFTWARE	ASP B:21 , HOH B:202 , HOH B:203 , GLU C:18	BINDING SITE FOR RESIDUE CD B 201
11	BC2	SOFTWARE	GLU B:24 , ASP B:52 , HOH B:205 , HOH B:206 , HOH B:207	BINDING SITE FOR RESIDUE CD B 204
12	BC3	SOFTWARE	HIS B:68 , HOH B:209 , HOH B:210 , HOH B:211 , HOH B:212 , HOH B:213	BINDING SITE FOR RESIDUE CD B 208
13	BC4	SOFTWARE	ASP B:58 , HOH B:215 , HOH B:216 , HOH B:217 , HOH B:218	BINDING SITE FOR RESIDUE CD B 214
14	BC5	SOFTWARE	GLU B:64 , HOH C:226 , HOH C:228	BINDING SITE FOR RESIDUE CD B 225
15	BC6	SOFTWARE	ASP B:39 , GLN B:40	BINDING SITE FOR RESIDUE CD B 229
16	BC7	SOFTWARE	GLU A:18 , ASP C:21 , HOH C:302 , HOH C:303	BINDING SITE FOR RESIDUE CD A 301
17	BC8	SOFTWARE	GLU C:24 , ASP C:52 , HOH C:305 , HOH C:306 , HOH C:307	BINDING SITE FOR RESIDUE CD C 304
18	BC9	SOFTWARE	ASP A:39 , HIS C:68 , HOH C:309 , HOH C:310 , HOH C:311	BINDING SITE FOR RESIDUE CD C 308
19	CC1	SOFTWARE	ASP C:58 , HOH C:315 , HOH C:316 , HOH C:317 , HOH C:318	BINDING SITE FOR RESIDUE CD C 314
20	CC2	SOFTWARE	HOH A:327 , GLU C:64 , HOH C:326	BINDING SITE FOR RESIDUE CD C 325

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:71
 aligned with Q9PST8_CHICK | Q9PST8 from UniProtKB/TrEMBL  Length:71

    Alignment length:71
                                    10        20        30        40        50        60        70 
          Q9PST8_CHICK    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
               SCOP domains d1yiwa1 A:1-71 Ubiquitin                                                SCOP domains
               CATH domains 1yiwA00 A:1-71                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1yiw A  1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
                                    10        20        30        40        50        60        70

Chain B from PDB  Type:PROTEIN  Length:71
 aligned with Q9PST8_CHICK | Q9PST8 from UniProtKB/TrEMBL  Length:71

    Alignment length:71
                                    10        20        30        40        50        60        70 
          Q9PST8_CHICK    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
               SCOP domains d1yiwb1 B:1-71 Ubiquitin                                                SCOP domains
               CATH domains 1yiwB00 B:1-71                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhh.eee..ee......hhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1yiw B  1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
                                    10        20        30        40        50        60        70

Chain C from PDB  Type:PROTEIN  Length:74
 aligned with Q9PST8_CHICK | Q9PST8 from UniProtKB/TrEMBL  Length:71

    Alignment length:74
                                                                                                 71   
                                    10        20        30        40        50        60        70|   
          Q9PST8_CHICK    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL---  -
               SCOP domains d1yiwc1 C:1-71 Ubiquitin                                               --- SCOP domains
               CATH domains 1yiwC00 C:1-74                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.....eeeee.....hhhhhhhhhhhhhh.hhh.eeeee..ee......hhhhh.....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                  1yiw C  1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                                    10        20        30        40        50        60        70

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 3)

CATH Domains (1, 3)

Pfam Domains (0, 0)

Gene Ontology (21, 21)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (Q9PST8_CHICK | Q9PST8)

molecular function
	GO:0002020	protease binding	Interacting selectively and non-covalently with any protease or peptidase.
	GO:0003735	structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
	GO:0060612	adipose tissue development	The process whose specific outcome is the progression of adipose tissue over time, from its formation to the mature structure. Adipose tissue is specialized tissue that is used to store fat.
	GO:0097009	energy homeostasis	Any process involved in the balance between food intake (energy input) and energy expenditure.
	GO:0060613	fat pad development	The progression of a fat pad from its initial formation to its mature structure. A fat pad is an accumulation of adipose tissue.
	GO:0008585	female gonad development	The process whose specific outcome is the progression of the female gonad over time, from its formation to the mature structure.
	GO:0007144	female meiosis I	The cell cycle process in which the first meiotic division occurs in the female germline.
	GO:0021888	hypothalamus gonadotrophin-releasing hormone neuron development	The process whose specific outcome is the progression of a hypothalamus gonadotrophin-releasing hormone neuron over time, from initial commitment of its fate, to the fully functional differentiated cell.
	GO:0008584	male gonad development	The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure.
	GO:0007141	male meiosis I	A cell cycle process comprising the steps by which a cell progresses through male meiosis I, the first meiotic division in the male germline.
	GO:0072520	seminiferous tubule development	The reproductive developmental process whose specific outcome is the progression of the seminiferous tubule over time, from its formation to the mature structure. Seminiferous tubules are ducts located in the testicles, and are the specific location of meiosis, and the subsequent creation of gametes, namely spermatozoa.
	GO:0010992	ubiquitin recycling	Any process involved in the maintenance of an internal steady state of ubiquitin monomers and free ubiquitin chains at the level of the cell by recycling ubiquitin from proteasome-bound ubiquitinated intermediates.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0022627	cytosolic small ribosomal subunit	The small subunit of a ribosome located in the cytosol.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0043209	myelin sheath	An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
	GO:0005730	nucleolus	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0015935	small ribosomal subunit	The smaller of the two subunits of a ribosome.

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		Biological Unit 7	[ Jena3D ]

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	1yiw
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 20)