1YFO - JenaLib

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Title :   RECEPTOR PROTEIN TYROSINE PHOSPHATASE ALPHA, DOMAIN 1 FROM MOUSE

Authors :   A. M. Bilwes, J. P. Noel

Date :   11 Dec 96 (Deposition) - 01 Apr 97 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Hydrolase, Signal Transduction, Receptor, Glycoprotein, Phosphorylation, Signal (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. M. Bilwes, J. Den Hertog, T. Hunter, J. P. Noel
Structural Basis For Inhibition Of Receptor Protein-Tyrosine Phosphatase-Alpha By Dimerization.
Nature V. 382 555 1996
PubMed-ID: 8700232 | Reference-DOI: 10.1038/382555A0
(for further references see the PDB file header)

Molecule 1 - RECEPTOR PROTEIN TYROSINE PHOSPHATASE ALPHA
	Cell Line	:	BL21
	Chains	:	A, B
	EC Number	:	3.1.3.48
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cellular Location	:	CYTOPLASM
	Expression System Cell Line	:	BL21
	Expression System Strain	:	293
	Expression System Taxid	:	562
	Expression System Vector	:	P-GEX
	Expression System Vector Type	:	PLASMID
	Fragment	:	MEMBRANE PROXIMAL CATALYTIC DOMAIN
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	TYPE I MEMBRANE PROTEIN
	Synonym	:	D1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1YFO)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	S1	UNKNOWN	CYS A:433 , ASP A:401	ACTIVE SITE
2	S2	UNKNOWN	CYS B:433 , ASP B:401	ACTIVE SITE

(no "SS Bond" information available for 1YFO)

(no "Cis Peptide Bond" information available for 1YFO)

(no "SAP(SNP)/Variant" information available for 1YFO)

Asymmetric Unit (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TYR_PHOSPHATASE_PTP	PS50055	PTP type protein phosphatase family profile.	PTPRA_MOUSE	232-528 560-818	2	A:232-492 B:232-492 -
2	TYR_PHOSPHATASE_2	PS50056	Tyrosine specific protein phosphatases family profile.	PTPRA_MOUSE	448-519 734-809	2	A:412-483 B:412-483 -
3	TYR_PHOSPHATASE_1	PS00383	Tyrosine specific protein phosphatases active site.	PTPRA_MOUSE	467-477 757-767	2	A:431-441 B:431-441 -

Biological Unit 1 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TYR_PHOSPHATASE_PTP	PS50055	PTP type protein phosphatase family profile.	PTPRA_MOUSE	232-528 560-818	1	A:232-492 - -
2	TYR_PHOSPHATASE_2	PS50056	Tyrosine specific protein phosphatases family profile.	PTPRA_MOUSE	448-519 734-809	1	A:412-483 - -
3	TYR_PHOSPHATASE_1	PS00383	Tyrosine specific protein phosphatases active site.	PTPRA_MOUSE	467-477 757-767	1	A:431-441 - -

Biological Unit 2 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TYR_PHOSPHATASE_PTP	PS50055	PTP type protein phosphatase family profile.	PTPRA_MOUSE	232-528 560-818	1	- B:232-492 -
2	TYR_PHOSPHATASE_2	PS50056	Tyrosine specific protein phosphatases family profile.	PTPRA_MOUSE	448-519 734-809	1	- B:412-483 -
3	TYR_PHOSPHATASE_1	PS00383	Tyrosine specific protein phosphatases active site.	PTPRA_MOUSE	467-477 757-767	1	- B:431-441 -

(no "Exon" information available for 1YFO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:279
 aligned with PTPRA_MOUSE | P18052 from UniProtKB/Swiss-Prot  Length:829

    Alignment length:324
                                   217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527    
          PTPRA_MOUSE   208 KYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPFLSLAVSKDAVKALNKTTPLLERRFIGKSNSRGCLSDDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY 531
               SCOP domains d1yfoa_ A: Tyrosine phosphatase                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1yfoA00 A:208-495 Protein tyrosine phosphatase superfamily                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhh................hhhhhh.........------------------------------------....................eeee........eeee....hhhhhhhhhhhhh....eeee....................eeee..eeeeeeeeee...eeeeeeeee.---------.eeeeeeee............hhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhh........hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------------------------TYR_PHOSPHATASE_PTP  PDB: A:232-492 UniProt: 232-528                                                                                                                                                                                                                                                     --- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHATASE_2  PDB: A:412-483 UniProt: 448-519                      ------------ PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHA------------------------------------------------------ PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1yfo A 208 KYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPY------------------------------------DHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQQ---------QRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY 495
                                   217       227       237       247       257       267|        -         -         -       271       281       291       301       311       321       331       341       351       361       371      |  -      |391       401       411       421       431       441       451       461       471       481       491    
                                                                                      268                                  269                                                                                                          378       388

Chain B from PDB  Type:PROTEIN  Length:279
 aligned with PTPRA_MOUSE | P18052 from UniProtKB/Swiss-Prot  Length:829

    Alignment length:324
                                   217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527    
          PTPRA_MOUSE   208 KYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPFLSLAVSKDAVKALNKTTPLLERRFIGKSNSRGCLSDDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY 531
               SCOP domains d1yfob_ B: Tyrosine phosphatase                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1yfoB00 B:208-495 Protein tyrosine phosphatase superfamily                                                                                                                                                                                                                                                                           CATH domains
           Pfam domains (1) -------------------------------------------------------------                                    Y_phosphatase-1yfoB01 B:269-491                                                                                                                                                                                                ---- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------                                    Y_phosphatase-1yfoB02 B:269-491                                                                                                                                                                                                ---- Pfam domains (2)
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhh...........hhhh.hhhhhh.........------------------------------------....................eeee........eeee....hhhhhhhhhhhhh....eeee....................eeee..eeeeeeeeee...eeeeeeeee.---------.eeeeeeee............hhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhh........hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ------------------------TYR_PHOSPHATASE_PTP  PDB: B:232-492 UniProt: 232-528                                                                                                                                                                                                                                                     --- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHATASE_2  PDB: B:412-483 UniProt: 448-519                      ------------ PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TYR_PHOSPHA------------------------------------------------------ PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1yfo B 208 KYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPY------------------------------------DHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQQ---------QRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLY 495
                                   217       227       237       247       257       267|        -         -         -       271       281       291       301       311       321       331       341       351       361       371      |  -      |391       401       411       421       431       441       451       461       471       481       491    
                                                                                      268                                  269                                                                                                          378       388

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Protein-Tyrosine Phosphatase; Chain A (262)

Homologous Superfamily: Protein tyrosine phosphatase superfamily (228)

House mouse (Mus musculus) (6)

1a	1yfoA00	A:208-495
1b	1yfoB00	B:208-495

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Phosphatase (121)

Family: Y_phosphatase (93)

Mus musculus (Mouse) (3)

1a	Y_phosphatase-1yfoB01	B:269-491
1b	Y_phosphatase-1yfoB02	B:269-491

Asymmetric Unit(hide GO term definitions)

Chain A,B (PTPRA_MOUSE | P18052)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016791	phosphatase activity	Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
	GO:0004721	phosphoprotein phosphatase activity	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004725	protein tyrosine phosphatase activity	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
biological process
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
	GO:0008286	insulin receptor signaling pathway	The series of molecular signals generated as a consequence of the insulin receptor binding to insulin.
	GO:0035335	peptidyl-tyrosine dephosphorylation	The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
	GO:0006470	protein dephosphorylation	The process of removing one or more phosphoric residues from a protein.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0043235	receptor complex	Any protein complex that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.

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(no "Related Entries Specified in the PDB File" available for 1YFO)

Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (2, 2)

SS Bonds (0, 0)

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