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(-) Description

Title :  CONSERVED HYPOTHETICAL PROTEIN PFU-838710-001 FROM PYROCOCCUS FURIOSUS
 
Authors :  H. Yang, J. Chang, A. Shah, J. D. Ng, Z. -J. Liu, L. Chen, D. Lee, W. Tempel, J. L. Praissman, D. Lin, W. B. Arendall Iii, J. S. Richardson, D. C. Ric F. E. Jenney Jr. , M. W. W. Adams, J. P. Rose, B. -C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Date :  28 Dec 04  (Deposition) - 11 Jan 05  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Southeast Collaboratory For Structural Genomics, Secsg, Protein Structure Initiative, Psi, Conserved Hypothetical Protein, Pyrococcus Furiosus, Hyperthermophile, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yang, J. Chang, A. Shah, J. D. Ng, Z. -J. Liu, L. Chen, D. Lee, W. Tempel J. L. Praissman, D. Lin, W. B. Arendall Iii, J. S. Richardson, D. C. Richardson, F. E. Jenney Jr. , M. W. W. Adams, J. P. Rose, B. -C. Wan
Conserved Hypothetical Protein Pfu-838710-001 From Pyrococcus Furiosus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN PFU-838710-001
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PF0863
    Organism Scientific: PYROCOCCUS FURIOSUS (STRAIN ATCC 43587 / DSM 3638 / JCM 8422 / VC1)
    Organism Taxid: 186497
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / VC1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1PT1Ligand/IonPLATINUM (II) ION
2UNX7Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:108 , MET A:146BINDING SITE FOR RESIDUE PT A 1201
2AC2SOFTWARELYS A:6BINDING SITE FOR RESIDUE UNX A 202
3AC3SOFTWAREARG A:47 , LYS A:100 , ARG A:102 , UNX A:204BINDING SITE FOR RESIDUE UNX A 203
4AC4SOFTWAREARG A:45 , UNX A:203 , UNX A:205BINDING SITE FOR RESIDUE UNX A 204
5AC5SOFTWAREARG A:45 , ARG A:47 , UNX A:204BINDING SITE FOR RESIDUE UNX A 205
6AC6SOFTWAREARG B:47 , LYS B:100 , ARG B:102BINDING SITE FOR RESIDUE UNX B 1203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YEM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Arg A:40 -Pro A:41
2Arg B:40 -Pro B:41

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YEM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YEM)

(-) Exons   (0, 0)

(no "Exon" information available for 1YEM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:163
 aligned with Q8U2H2_PYRFU | Q8U2H2 from UniProtKB/TrEMBL  Length:171

    Alignment length:163
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160   
         Q8U2H2_PYRFU     1 MEVEIKFKIKLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRPKLLRIRGVHNLKKYYLTFKEILDENNEEFYEVEFEIGDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGDFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELI 163
               SCOP domains d1yema_ A: Hypothetical protein PF0863                                                                                                                              SCOP domains
               CATH domains 1yemA00 A:1-163 Hypothetical Protein Pfu-838710-001                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeehhhhhhhhhhh...eeeeeeeeeeeee.....eeeeeeee....eeeeeeeee......eeeeeeeee.hhhhhhhhhhhh...eeeeeeeeeeeeee..eeeeeeee...eeeeeeeee..hhhhhhhhhhhhhhhh..hhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yem A   1 SEVEIKFKIKLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRPKLLRIRGVHNLKKYYLTFKEILDENNEEFYEVEFEIGDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGDFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELI 163
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160   


Chain B from PDB  Type:PROTEIN  Length:166
 aligned with Q8U2H2_PYRFU | Q8U2H2 from UniProtKB/TrEMBL  Length:171

    Alignment length:166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      
         Q8U2H2_PYRFU     1 MEVEIKFKIKLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRPKLLRIRGVHNLKKYYLTFKEILDENNEEFYEVEFEIGDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGDFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELINEL 166
               SCOP domains d1yemb_ B: Hypothetical protein PF0863                                                                                                                                 SCOP domains
               CATH domains 1yemB00 B:1-166 Hypothetical Protein Pfu-838710-001                                                                                                                    CATH domains
           Pfam domains (1) -CYTH-1yemB01 B:2-165                                                                                                                                                - Pfam domains (1)
           Pfam domains (2) -CYTH-1yemB02 B:2-165                                                                                                                                                - Pfam domains (2)
         Sec.struct. author .eeeeeeeehhhhhhhhhhhhh.eeeeeeeeeeeee.....eeeeeeee....eeeeeeeee......eeeeeeeee.hhhhhhhhhhhh...eeeeeeeeeeeeee..eeeeeeee...eeeeeeeee..hhhhhhhhhhhhhhhh..hhhhh...hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yem B   1 SEVEIKFKIKLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRPKLLRIRGVHNLKKYYLTFKEILDENNEEFYEVEFEIGDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGDFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELINEL 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: CYTH (6)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1YEM)

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  Q8U2H2_PYRFU | Q8U2H2
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