1YCH - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   X-RAY CRYSTAL STRUCTURES OF MOORELLA THERMOACETICA FPRA. NOVEL DIIRON SITE STRUCTURE AND MECHANISTIC INSIGHTS INTO A SCAVENGING NITRIC OXIDE REDUCTASE

Authors :   R. Silaghi-Dumitrescu, D. M. Kurtz, W. N. Lanzilotta

Date :   22 Dec 04 (Deposition) - 19 Apr 05 (Release) - 21 Sep 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A (1x),B (1x),C (1x),D (1x)
Biol. Unit 4: B (1x),D (1x)
Biol. Unit 5: A (1x),C (1x)

Keywords :   Nitric Oxide, Reductase, Diiron Site, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Silaghi-Dumitrescu, D. M. Kurtz Jr, L. G. Ljungdahl, W. N. Lanzilotta
X-Ray Crystal Structures Of Moorella Thermoacetica Fpra. Novel Diiron Site Structure And Mechanistic Insights Into A Scavenging Nitric Oxide Reductase.
Biochemistry V. 44 6492 2005
PubMed-ID: 15850383 | Reference-DOI: 10.1021/BI0473049

Molecule 1 - NITRIC OXIDE REDUCTASE
	Chains	:	A, B, C, D
	EC Number	:	1.-.-.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	SCAVENGING NITRIC OXIDE REDUCTASE
	Gene	:	FPRA
	Organism Scientific	:	MOORELLA THERMOACETICA
	Organism Taxid	:	1525
	Synonym	:	TYPE A FLAVOPROTEIN FPRA, FMN- PROTEIN FPRA, FLAVOPROTEIN A

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)
Biological Unit 4 (1x)	:		B (1x)		D (1x)
Biological Unit 5 (1x)	:	A (1x)		C (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 16)

No.	Name	Count	Type	Full Name
1	FEO	4	Ligand/Ion	MU-OXO-DIIRON
2	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE
3	ZN	8	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	FEO	2	Ligand/Ion	MU-OXO-DIIRON
2	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	FEO	2	Ligand/Ion	MU-OXO-DIIRON
2	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (2, 4)

No.	Name	Count	Type	Full Name
1	FEO	2	Ligand/Ion	MU-OXO-DIIRON
2	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	FEO	1	Ligand/Ion	MU-OXO-DIIRON
2	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (2, 2)

No.	Name	Count	Type	Full Name
1	FEO	1	Ligand/Ion	MU-OXO-DIIRON
2	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:2 , GLU A:60 , HIS C:271 , ASP C:275 , ZN C:621	BINDING SITE FOR RESIDUE ZN A 600
02	AC2	SOFTWARE	HIS A:271 , ASP A:275 , SER C:2 , GLU C:60 , ZN C:620	BINDING SITE FOR RESIDUE ZN A 601
03	AC3	SOFTWARE	SER B:2 , GLU B:60 , HIS D:271 , ASP D:275 , ZN D:631	BINDING SITE FOR RESIDUE ZN B 610
04	AC4	SOFTWARE	HIS B:271 , ASP B:275 , SER D:2 , GLU D:60 , ZN D:630	BINDING SITE FOR RESIDUE ZN B 611
05	AC5	SOFTWARE	HIS A:271 , ASP A:275 , ZN A:601 , SER C:2 , GLU C:60	BINDING SITE FOR RESIDUE ZN C 620
06	AC6	SOFTWARE	SER A:2 , GLU A:60 , ZN A:600 , HIS C:271 , ASP C:275	BINDING SITE FOR RESIDUE ZN C 621
07	AC7	SOFTWARE	HIS B:271 , ASP B:275 , ZN B:611 , SER D:2 , GLU D:60	BINDING SITE FOR RESIDUE ZN D 630
08	AC8	SOFTWARE	SER B:2 , GLU B:60 , ZN B:610 , HIS D:271 , ASP D:275	BINDING SITE FOR RESIDUE ZN D 631
09	AC9	SOFTWARE	HIS A:81 , GLU A:83 , ASP A:85 , HIS A:86 , HIS A:148 , ASP A:167 , HIS A:228 , HOH A:705	BINDING SITE FOR RESIDUE FEO A 501
10	BC1	SOFTWARE	THR A:261 , MET A:262 , TRP A:263 , LEU A:264 , SER A:265 , THR A:266 , PRO A:312 , THR A:313 , ILE A:314 , ASN A:315 , ASN A:316 , TYR A:345 , GLY A:346 , TRP A:347 , GLY A:348 , GLY A:349 , TRP A:376 , HIS B:25 , GLU B:83 , HIS B:148 , TRP B:149	BINDING SITE FOR RESIDUE FMN A 701
11	BC2	SOFTWARE	HIS B:81 , GLU B:83 , ASP B:85 , HIS B:86 , HIS B:148 , ASP B:167 , HIS B:228 , HOH B:714	BINDING SITE FOR RESIDUE FEO B 511
12	BC3	SOFTWARE	GLU A:83 , HIS A:148 , TRP A:149 , HOH A:706 , THR B:261 , MET B:262 , TRP B:263 , LEU B:264 , SER B:265 , THR B:266 , PRO B:312 , THR B:313 , ILE B:314 , ASN B:315 , ASN B:316 , ALA B:344 , TYR B:345 , GLY B:346 , TRP B:347 , GLY B:348 , GLY B:349 , TRP B:376 , HOH B:725 , HOH B:728 , HOH B:748	BINDING SITE FOR RESIDUE FMN B 711
13	BC4	SOFTWARE	HIS C:81 , GLU C:83 , ASP C:85 , HIS C:86 , HIS C:148 , ASP C:167 , HIS C:228	BINDING SITE FOR RESIDUE FEO C 521
14	BC5	SOFTWARE	THR C:261 , MET C:262 , TRP C:263 , LEU C:264 , SER C:265 , THR C:266 , PRO C:312 , THR C:313 , ILE C:314 , ASN C:315 , ASN C:316 , ALA C:344 , TYR C:345 , GLY C:346 , TRP C:347 , GLY C:348 , GLY C:349 , TRP C:376 , HOH C:732 , HIS D:25 , GLU D:83 , TRP D:149	BINDING SITE FOR RESIDUE FMN C 721
15	BC6	SOFTWARE	HIS D:81 , GLU D:83 , ASP D:85 , HIS D:86 , HIS D:148 , ASP D:167 , HIS D:228 , HOH D:737	BINDING SITE FOR RESIDUE FEO D 531
16	BC7	SOFTWARE	HIS C:25 , GLU C:83 , TRP C:149 , THR D:261 , MET D:262 , TRP D:263 , LEU D:264 , SER D:265 , THR D:266 , PRO D:312 , THR D:313 , ILE D:314 , ASN D:315 , ASN D:316 , ALA D:344 , TYR D:345 , GLY D:346 , TRP D:347 , GLY D:348 , GLY D:349 , TRP D:376 , HOH D:786	BINDING SITE FOR RESIDUE FMN D 731

(no "SS Bond" information available for 1YCH)

Asymmetric Unit

No.	Residues
1	Asp C:70	-	Pro C:71
2	Asp D:70	-	Pro D:71

(no "SAP(SNP)/Variant" information available for 1YCH)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FPRA_MOOTA	255-394	4	A:255-394 B:255-394 C:255-394 D:255-394

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FPRA_MOOTA	255-394	2	A:255-394 B:255-394 - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FPRA_MOOTA	255-394	2	- - C:255-394 D:255-394

Biological Unit 3 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FPRA_MOOTA	255-394	4	A:255-394 B:255-394 C:255-394 D:255-394

Biological Unit 4 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FPRA_MOOTA	255-394	2	- B:255-394 - D:255-394

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FPRA_MOOTA	255-394	2	A:255-394 - C:255-394 -

(no "Exon" information available for 1YCH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:398
 aligned with FPRA_MOOTA | Q9FDN7 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:398
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391        
           FPRA_MOOTA     2 SQPVAITDGIYWVGAVDWNIRYFHGPAFSTHRGTTYNAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARIAD 399
               SCOP domains d1ycha2 A:2-250 Nitric oxide reductase N-terminal domain                                                                                                                                                                                                 d1ycha1 A:251-399 Nitric oxide reductase C-terminal domain                                                                                            SCOP domains
               CATH domains 1ychA01 A:2-248 Metallo-beta-lactamase, chain A                                                                                                                                                                                                        -----1ychA02 A:254-396  [code=3.40.50.360, no name defined]                                                                                         --- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eee..eee....ee....ee....eee..eee.....eee...hhhhhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhh...eeeehhhhhhhhhhhh.....eeee.....eee....eeeeee.........eeeeehhh.eeeee............hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh...eeeee........hhhhhhhhhhhhhhh....eeeeeeee....hhhhhhhhhhhhh..ee......eee...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLAVODOXIN_LIKE  PDB: A:255-394 UniProt: 255-394                                                                                            ----- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ych A   2 SQPVAITDGIYWVGAVDWNIRYFHGPAFSTHRGTTYNAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARIAD 399
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391

Chain B from PDB  Type:PROTEIN  Length:398
 aligned with FPRA_MOOTA | Q9FDN7 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:398
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391        
           FPRA_MOOTA     2 SQPVAITDGIYWVGAVDWNIRYFHGPAFSTHRGTTYNAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARIAD 399
               SCOP domains d1ychb2 B:2-250 Nitric oxide reductase N-terminal domain                                                                                                                                                                                                 d1ychb1 B:251-399 Nitric oxide reductase C-terminal domain                                                                                            SCOP domains
               CATH domains 1ychB01 B:2-248 Metallo-beta-lactamase, chain A                                                                                                                                                                                                        -----1ychB02 B:254-396  [code=3.40.50.360, no name defined]                                                                                         --- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eee..eee....ee....ee....eee..eee.....eee...hhhhhhhhhhhhhhhh......eee....hhhhhhhhhhhhhhh...eeeehhhhhhhhhhhh.....eeee.....eee....eeeeee.........eeee.hhh.eeeee............hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh...eeeee........hhhhhhhhhhhhhhh....eeeeeeee....hhhhhhhhhhhhh..ee......eee...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLAVODOXIN_LIKE  PDB: B:255-394 UniProt: 255-394                                                                                            ----- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ych B   2 SQPVAITDGIYWVGAVDWNIRYFHGPAFSTHRGTTYNAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARIAD 399
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391

Chain C from PDB  Type:PROTEIN  Length:398
 aligned with FPRA_MOOTA | Q9FDN7 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:398
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391        
           FPRA_MOOTA     2 SQPVAITDGIYWVGAVDWNIRYFHGPAFSTHRGTTYNAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARIAD 399
               SCOP domains d1ychc2 C:2-250 Nitric oxide reductase N-terminal domain                                                                                                                                                                                                 d1ychc1 C:251-399 Nitric oxide reductase C-terminal domain                                                                                            SCOP domains
               CATH domains 1ychC01 C:2-248 Metallo-beta-lactamase, chain A                                                                                                                                                                                                        -----1ychC02 C:254-396  [code=3.40.50.360, no name defined]                                                                                         --- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eee..eee....ee....ee....eee..eee.....eee...hhhhhhhhhhhhhh........eee....hhhhhhhhhhhhhhh...eeeehhhhhhhhhhhh.....eeee.....eee....eeeeee.........eeeee....eeeee............hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh...eeeee........hhhhhhhhhhhhhhh....eeeeeeee....hhhhhhhhhhhhh..ee......eee...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLAVODOXIN_LIKE  PDB: C:255-394 UniProt: 255-394                                                                                            ----- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ych C   2 SQPVAITDGIYWVGAVDWNIRYFHGPAFSTHRGTTYNAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARIAD 399
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391

Chain D from PDB  Type:PROTEIN  Length:398
 aligned with FPRA_MOOTA | Q9FDN7 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:398
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391        
           FPRA_MOOTA     2 SQPVAITDGIYWVGAVDWNIRYFHGPAFSTHRGTTYNAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARIAD 399
               SCOP domains d1ychd2 D:2-250 Nitric oxide reductase N-terminal domain                                                                                                                                                                                                 d1ychd1 D:251-399 Nitric oxide reductase C-terminal domain                                                                                            SCOP domains
               CATH domains 1ychD01 D:2-248 Metallo-beta-lactamase, chain A                                                                                                                                                                                                        -----1ychD02 D:254-396  [code=3.40.50.360, no name defined]                                                                                         --- CATH domains
           Pfam domains (1) ------------------------------Lactamase_B-1ychD05 D:32-241                                                                                                                                                                                      ---------------Flavodoxin_1-1ychD01 D:257-390                                                                                                        --------- Pfam domains (1)
           Pfam domains (2) ------------------------------Lactamase_B-1ychD06 D:32-241                                                                                                                                                                                      ---------------Flavodoxin_1-1ychD02 D:257-390                                                                                                        --------- Pfam domains (2)
           Pfam domains (3) ------------------------------Lactamase_B-1ychD07 D:32-241                                                                                                                                                                                      ---------------Flavodoxin_1-1ychD03 D:257-390                                                                                                        --------- Pfam domains (3)
           Pfam domains (4) ------------------------------Lactamase_B-1ychD08 D:32-241                                                                                                                                                                                      ---------------Flavodoxin_1-1ychD04 D:257-390                                                                                                        --------- Pfam domains (4)
         Sec.struct. author ...eeee..eee..eee....ee....ee....eee..eee.....eee...hhhhhhhhhhhhhh........eee....hhhhhhhhhhhhhhh...eeeehhhhhhhhhhhh.....eeee.....eee....eeeeee.........eeee.hhh.eeeee............hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhhhhh....eeeeeeee....hhhhhhhhhhhhh..ee......eee...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FLAVODOXIN_LIKE  PDB: D:255-394 UniProt: 255-394                                                                                            ----- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ych D   2 SQPVAITDGIYWVGAVDWNIRYFHGPAFSTHRGTTYNAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARIAD 399
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Metallo-hydrolase/oxidoreductase (184)

Superfamily: Metallo-hydrolase/oxidoreductase (184)

Family: ROO N-terminal domain-like (9)

Protein domain: Nitric oxide reductase N-terminal domain (4)

Moorella thermoacetica [TaxId: 1525] (3)

1a	d1ycha2	A:2-250
1b	d1ychb2	B:2-250
1c	d1ychc2	C:2-250
1d	d1ychd2	D:2-250

Class: Alpha and beta proteins (a/b) (23833)

Fold: Flavodoxin-like (1057)

Superfamily: Flavoproteins (208)

Family: Flavodoxin-related (81)

Protein domain: Nitric oxide reductase C-terminal domain (4)

Moorella thermoacetica [TaxId: 1525] (3)

2a	d1ycha1	A:251-399
2b	d1ychb1	B:251-399
2c	d1ychc1	C:251-399
2d	d1ychd1	D:251-399

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.360, no name defined] (150)

Moorella thermoacetica. Organism_taxid: 1525. (1)

1a	1ychA02	A:254-396
1b	1ychB02	B:254-396
1c	1ychC02	C:254-396
1d	1ychD02	D:254-396

Architecture: 4-Layer Sandwich (459)

Topology: Metallo-beta-lactamase; Chain A (92)

Homologous Superfamily: Metallo-beta-lactamase, chain A (92)

Moorella thermoacetica. Organism_taxid: 1525. (1)

2a	1ychA01	A:2-248
2b	1ychB01	B:2-248
2c	1ychC01	C:2-248
2d	1ychD01	D:2-248

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Flavoprotein (71)

Family: Flavodoxin_1 (23)

Moorella thermoacetica (strain ATCC 39073) (2)

1a	Flavodoxin_1-1ychD01	D:257-390
1b	Flavodoxin_1-1ychD02	D:257-390
1c	Flavodoxin_1-1ychD03	D:257-390
1d	Flavodoxin_1-1ychD04	D:257-390

Clan: Metallo-HOrase (67)

Family: Lactamase_B (53)

Moorella thermoacetica (strain ATCC 39073) (2)

2a	Lactamase_B-1ychD05	D:32-241
2b	Lactamase_B-1ychD06	D:32-241
2c	Lactamase_B-1ychD07	D:32-241
2d	Lactamase_B-1ychD08	D:32-241

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (FPRA_MOOTA | Q9FDN7)

molecular function
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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Access by PDB/NDB ID
	1ych
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	FPRA_MOOTA \| Q9FDN7
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	FPRA_MOOTA \| Q9FDN7
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	FPRA_MOOTA \| Q9FDN7	:	1ycf 1ycg

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 16)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

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