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(-) Description

Title :  CABAN33 VHH FRAGMENT AGAINST VSG
 
Authors :  K. Conrath, C. Vincke, B. Stijlemans, J. Schymkowitz, L. Wyns, S. Muyldermans, R. Loris
Date :  22 Dec 04  (Deposition) - 14 Jun 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Antibody, Camel Antibody, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Conrath, C. Vincke, B. Stijlemans, J. Schymkowitz, K. Decanniere, L. Wyns, S. Muyldermans, R. Loris
Antigen Binding And Solubility Effects Upon The Veneering Of A Camel Vhh In Framework-2 To Mimic A Vh.
J. Mol. Biol. V. 350 112 2005
PubMed-ID: 15913651  |  Reference-DOI: 10.1016/J.JMB.2005.04.050
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANTI-VSG IMMUNOGLOBULIN HEAVY CHAIN VARIABLE DOMAIN CABAN33
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CABAN33
    Organism Common: ARABIAN CAMEL
    Organism Scientific: CAMELUS DROMEDARIUS
    Organism Taxid: 9838

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:27 , THR A:28 , GLY B:100 , VAL B:101 , ARG B:102 , SER B:103 , ARG B:105 , HOH B:520BINDING SITE FOR RESIDUE SO4 B 401
2AC2SOFTWARESER A:30 , VAL A:101 , ARG A:102 , SER A:103BINDING SITE FOR RESIDUE SO4 A 402

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:22 -A:95
2A:32 -A:99
3B:22 -B:95
4B:32 -B:99

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YC7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YC7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YC7)

(-) Exons   (0, 0)

(no "Exon" information available for 1YC7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains d1yc7a_ A: automated matches                                                                                         SCOP domains
               CATH domains 1yc7A00 A:2-117 Immunoglobulins                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..........eeeeeeee......eeeeeeee.....eeeeeee.....eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeee.....eeee...eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc7 A   2 VQLVESGGGSVQAGGSLRLSCAVSGSTYSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCGVRSIREYWGQGTQVTVS 117
                                    11        21        31        41        51        61        71        81        91       101       111      


Chain B from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains d1yc7b_ B: automated matches                                                                                         SCOP domains
               CATH domains 1yc7B00 B:2-118 Immunoglobulins                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eeee....eeeeeee......eeeeeeee.....eeeeeee.....eee.hhhh..eeeee.....eeeeee...hhhhheeeeeeeee.....eeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1yc7 B   2 VQLVESGGGSVQAGGSLRLSCAVSGTYSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDNAKNTVYLQMNSLQREDTGMYYCQIQCGVRSIREYWGQGTQVTVSS 118
                                    11        21    ||  32        42        52        62        72        82        92       102       112      
                                                   26|                                                                                          
                                                    28
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1YC7)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1YC7)

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