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(-) Description

Title :  CRYSTAL STRUCTURE OF BACILLUS SUBTILIS PROTEIN YHFP WITH NAD BOUND
 
Authors :  T. Min, J. Gorman, L. Shapiro, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  15 Dec 04  (Deposition) - 21 Dec 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Hypothetical Protein Yhfp, Bacillus Subtilis, Alcohol Dehydrogenase Activity, Zinc-Dependent, Structural Genomics, Protein Structure Initiative, Psi, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Min, J. Gorman, L. Shapiro, New York Structural Genomics Research Consortium (Nysgrc)
The Crystal Structure Of Hypothetical Protein Yhfp From Bacillus Subtilis
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN YHFP
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET26B
    Expression System Strain: BL21DE3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: YHFP
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 30)

Asymmetric/Biological Unit (2, 30)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
2NAD6Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:137 , ARG A:141 , GLY A:270 , ILE A:271 , ASP A:272 , TYR D:239BINDING SITE FOR RESIDUE NAD A 1255
2AC2SOFTWAREARG B:141 , GLY B:270 , ASP B:272 , PRO B:277 , TYR E:239BINDING SITE FOR RESIDUE NAD B 2255
3AC3SOFTWARELEU C:137 , ARG C:141 , GLY C:270 , ILE C:271 , ASP C:272 , CYS C:276 , PRO C:277 , TYR F:239 , GLY F:240 , GLY F:265BINDING SITE FOR RESIDUE NAD C 3255
4AC4SOFTWARETYR A:239 , GLY A:240 , GLY A:265 , LEU D:137 , ARG D:141 , GLY D:270 , ASP D:272BINDING SITE FOR RESIDUE NAD D 4255
5AC5SOFTWARETYR B:239 , GLY B:240 , GLY B:265 , ARG E:141 , GLY E:270 , ASP E:272 , CYS E:276 , PRO E:277BINDING SITE FOR RESIDUE NAD E 5255
6AC6SOFTWARETYR C:239 , GLY C:240 , ARG F:141 , GLY F:270 , ILE F:271 , ASP F:272BINDING SITE FOR RESIDUE NAD F 6255

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Y9E)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Tyr A:61 -Pro A:62
2Gly D:42 -Ile D:43
3Tyr F:61 -Pro F:62

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Y9E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Y9E)

(-) Exons   (0, 0)

(no "Exon" information available for 1Y9E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:329
 aligned with YHFP_BACSU | O07615 from UniProtKB/Swiss-Prot  Length:330

    Alignment length:329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321         
           YHFP_BACSU     2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330
               SCOP domains d1y9ea1 A:2-127,A:295-330 Hypothetical protein YhfP                                                                           d1y9ea2 A:128-294 Hypothetical protein YhfP                                                                                                                            d1y9ea1 A:2-127,A:295-330            SCOP domains
               CATH domains 1y9eA01 A:2-129,A:296-330 Medium-chain alcohol dehydrogenases, catalytic domain                                                 1y9eA02 A:130-295 NAD(P)-binding Rossmann-like Domain                                                                                                                 1y9eA01 A:2-129,A:296-330           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..........eeeeee.hhh....eeeee.....hhhhhhhh................eeeeeeee..........eeeee...............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh.eeeee...hhhhhhhhhhhhhh..eeeee.....hhhhhhhh.eeeeehhhhhh.............eeee...hhhhhhhhh......eeee.......eeee.hhhhhhhh.eeee......hhhhhhhhhhhhh.......hhh.eeeeee..hhhhhhhhh.......eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9e A   2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAmVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSmLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPmDVRAAVWERmSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330
                                    11        21        31        41        51        61        71        81        91       101       111       121    |  131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      |281      |291       301       311       321         
                                                                                                                                                      126-MSE                                     170-MSE                                                                                                     278-MSE   288-MSE                                      


Chain B from PDB  Type:PROTEIN  Length:329
 aligned with YHFP_BACSU | O07615 from UniProtKB/Swiss-Prot  Length:330

    Alignment length:329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321         
           YHFP_BACSU     2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330
               SCOP domains d1y9eb1 B:2-127,B:295-330 Hypothetical protein YhfP                                                                           d1y9eb2 B:128-294 Hypothetical protein YhfP                                                                                                                            d1y9eb1 B:2-127,B:295-330            SCOP domains
               CATH domains 1y9eB01 B:2-129,B:296-330 Medium-chain alcohol dehydrogenases, catalytic domain                                                 1y9eB02 B:130-295 NAD(P)-binding Rossmann-like Domain                                                                                                                 1y9eB01 B:2-129,B:296-330           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..ee............eee.hhh....eeeeeee...hhhhhhhhh..........ee...eeeeee............eeeee...............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhh.........eee....hhhhhhhhhhhhhh...eeee.....hhhhhhhh...eeehhhhhh.............eeee..hhhhhhhhhh......eeee..........eehhhhhhhh.eeee......hhhhhhhhhhhh........hhh.eeeee...hhhhhhhhh.......eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9e B   2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAmVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSmLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPmDVRAAVWERmSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330
                                    11        21        31        41        51        61        71        81        91       101       111       121    |  131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      |281      |291       301       311       321         
                                                                                                                                                      126-MSE                                     170-MSE                                                                                                     278-MSE   288-MSE                                      


Chain C from PDB  Type:PROTEIN  Length:329
 aligned with YHFP_BACSU | O07615 from UniProtKB/Swiss-Prot  Length:330

    Alignment length:329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321         
           YHFP_BACSU     2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330
               SCOP domains d1y9ec1 C:2-127,C:295-330 Hypothetical protein YhfP                                                                           d1y9ec2 C:128-294 Hypothetical protein YhfP                                                                                                                            d1y9ec1 C:2-127,C:295-330            SCOP domains
               CATH domains 1y9eC01 C:2-129,C:296-330 Medium-chain alcohol dehydrogenases, catalytic domain                                                 1y9eC02 C:130-295 NAD(P)-binding Rossmann-like Domain                                                                                                                 1y9eC01 C:2-129,C:296-330           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...eee............ee.hhh....eeeeeeee..hhhhhhhhh.........eee...eeeeeeeee.........eeeee...............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhh.........eee....hhhhhhhhhhhhhh...eeeee...hhhhhhhhhh...eeehhhhh...........eeeeee..hhhhhhhhhh.eeeeeeeee........eeeehhhhhhhh.eeee......hhhhhhhhhhhhh.......hhhhh...ee..hhhhhh.............ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9e C   2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAmVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSmLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPmDVRAAVWERmSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330
                                    11        21        31        41        51        61        71        81        91       101       111       121    |  131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      |281      |291       301       311       321         
                                                                                                                                                      126-MSE                                     170-MSE                                                                                                     278-MSE   288-MSE                                      


Chain D from PDB  Type:PROTEIN  Length:329
 aligned with YHFP_BACSU | O07615 from UniProtKB/Swiss-Prot  Length:330

    Alignment length:329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321         
           YHFP_BACSU     2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330
               SCOP domains d1y9ed1 D:2-127,D:295-330 Hypothetical protein YhfP                                                                           d1y9ed2 D:128-294 Hypothetical protein YhfP                                                                                                                            d1y9ed1 D:2-127,D:295-330            SCOP domains
               CATH domains 1y9eD01 D:2-129,D:296-330 Medium-chain alcohol dehydrogenases, catalytic domain                                                 1y9eD02 D:130-295 NAD(P)-binding Rossmann-like Domain                                                                                                                 1y9eD01 D:2-129,D:296-330           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.........eeeeee.hhh....eee...ee..hhhhhhhh...........ee...eeeee.............eeeee...............eeehhhhhee.....hhhhhhhhhhhhhhhhhhhhhhhhh........eeee...hhhhhhhhhhhhhh...eeeee....hhhhhhhhh..eeeehhhhh.............eee....hhhhhhhhhhh....eee.........eeeehhhhhhhh.eee.......hhhhhhhhhhhh.......hhhhhh.......hhhhhhhhh..........ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9e D   2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAmVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSmLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPmDVRAAVWERmSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330
                                    11        21        31        41        51        61        71        81        91       101       111       121    |  131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      |281      |291       301       311       321         
                                                                                                                                                      126-MSE                                     170-MSE                                                                                                     278-MSE   288-MSE                                      


Chain E from PDB  Type:PROTEIN  Length:329
 aligned with YHFP_BACSU | O07615 from UniProtKB/Swiss-Prot  Length:330

    Alignment length:329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321         
           YHFP_BACSU     2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330
               SCOP domains d1y9ee1 E:2-127,E:295-330 Hypothetical protein YhfP                                                                           d1y9ee2 E:128-294 Hypothetical protein YhfP                                                                                                                            d1y9ee1 E:2-127,E:295-330            SCOP domains
               CATH domains 1y9eE01 E:2-129,E:296-330 Medium-chain alcohol dehydrogenases, catalytic domain                                                 1y9eE02 E:130-295 NAD(P)-binding Rossmann-like Domain                                                                                                                 1y9eE01 E:2-129,E:296-330           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.........eeeeee.hhh....eeeeeee...hhhhhhhh...........ee...eeeeeeee..........eeeee...............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhhh........eee....hhhhhhhhhhhhhh...eeee....hhhhhhhhh.eeeee...................eee...hhhhhhhhhhhh....eee........ee...hhhhhhhh.eee.......hhhhhhhhhhhhh.......hhh.eeeee...hhhhhhhhh.......eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9e E   2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAmVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSmLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPmDVRAAVWERmSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330
                                    11        21        31        41        51        61        71        81        91       101       111       121    |  131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      |281      |291       301       311       321         
                                                                                                                                                      126-MSE                                     170-MSE                                                                                                     278-MSE   288-MSE                                      


Chain F from PDB  Type:PROTEIN  Length:329
 aligned with YHFP_BACSU | O07615 from UniProtKB/Swiss-Prot  Length:330

    Alignment length:329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321         
           YHFP_BACSU     2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330
               SCOP domains d1y9ef1 F:2-127,F:295-330 Hypothetical protein YhfP                                                                           d1y9ef2 F:128-294 Hypothetical protein YhfP                                                                                                                            d1y9ef1 F:2-127,F:295-330            SCOP domains
               CATH domains 1y9eF01 F:2-129,F:296-330 Medium-chain alcohol dehydrogenases, catalytic domain                                                 1y9eF02 F:130-295 NAD(P)-binding Rossmann-like Domain                                                                                                                 1y9eF01 F:2-129,F:296-330           CATH domains
           Pfam domains (1) -----------------------------ADH_N-1y9eF01 F:31-93                                          --------------------------------------------------------------------ADH_zinc_N-1y9eF07 F:162-289                                                                                                    ----------------------------------------- Pfam domains (1)
           Pfam domains (2) -----------------------------ADH_N-1y9eF02 F:31-93                                          --------------------------------------------------------------------ADH_zinc_N-1y9eF08 F:162-289                                                                                                    ----------------------------------------- Pfam domains (2)
           Pfam domains (3) -----------------------------ADH_N-1y9eF03 F:31-93                                          --------------------------------------------------------------------ADH_zinc_N-1y9eF09 F:162-289                                                                                                    ----------------------------------------- Pfam domains (3)
           Pfam domains (4) -----------------------------ADH_N-1y9eF04 F:31-93                                          --------------------------------------------------------------------ADH_zinc_N-1y9eF10 F:162-289                                                                                                    ----------------------------------------- Pfam domains (4)
           Pfam domains (5) -----------------------------ADH_N-1y9eF05 F:31-93                                          --------------------------------------------------------------------ADH_zinc_N-1y9eF11 F:162-289                                                                                                    ----------------------------------------- Pfam domains (5)
           Pfam domains (6) -----------------------------ADH_N-1y9eF06 F:31-93                                          --------------------------------------------------------------------ADH_zinc_N-1y9eF12 F:162-289                                                                                                    ----------------------------------------- Pfam domains (6)
         Sec.struct. author ..eee..ee.ee..ee.....eee.hhh....eeeeeee...hhhhhhhh...........ee...eeeeee............eeeee...............eeehhh.eee.....hhhhhhhhhhhhhhhhhhhhhhhh.........eee....hhhhhhhhhhhhhhh..eeee.....hhhhhhhh...eee...................eeee..hhhhhhhhhh......eeee.......eeee.hhhhhhhh.eeee......hhhhhhhhhhhhh.......hhh.eeeeee..hhhhhhhhh.......eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y9e F   2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAmVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSmLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPmDVRAAVWERmSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330
                                    11        21        31        41        51        61        71        81        91       101       111       121    |  131       141       151       161       171       181       191       201       211       221       231       241       251       261       271      |281      |291       301       311       321         
                                                                                                                                                      126-MSE                                     170-MSE                                                                                                     278-MSE   288-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Fold: GroES-like (132)
(-)
Superfamily: GroES-like (130)
(-)
Family: Alcohol dehydrogenase-like, N-terminal domain (114)
(-)
Protein domain: Hypothetical protein YhfP (2)
(-)
Bacillus subtilis [TaxId: 1423] (2)
1ad1y9ea1A:2-127,A:295-330
1bd1y9ee1E:2-127,E:295-330
1cd1y9ef1F:2-127,F:295-330
1dd1y9eb1B:2-127,B:295-330
1ed1y9ec1C:2-127,C:295-330
1fd1y9ed1D:2-127,D:295-330
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Clan: GroES (70)
(-)
Family: ADH_N (62)
(-)
Bacillus subtilis (2)
1aADH_N-1y9eF01F:31-93
1bADH_N-1y9eF02F:31-93
1cADH_N-1y9eF03F:31-93
1dADH_N-1y9eF04F:31-93
1eADH_N-1y9eF05F:31-93
1fADH_N-1y9eF06F:31-93
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (YHFP_BACSU | O07615)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1y9e
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        YHFP_BACSU | O07615: 1tt7

(-) Related Entries Specified in the PDB File

1tt7 THE X-RAY CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN YHFP, CO-CRYSTALLIZED WITH NAD.
t786 RELATED ID: NYSGXRC-T786 RELATED DB: TARGETDB