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(-) Description

Title :  CONSERVED HYPOTHETICAL PROTEIN PFU-723267-001 FROM PYROCOCCUS FURIOSUS
 
Authors :  M. Zhao, J. Chang, J. Habel, H. Xu, L. Chen, D. Lee, D. Nguyen, S. - H. Chang, P. Horanyi, Q. Florence, W. Tempel, W. Zhou, D. Lin, H. Zhang, J. Praissman, F. E. Jenney Jr. , M. W. W. Adams, Z. -J. Liu, J. P. Rose, B. C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Date :  10 Dec 04  (Deposition) - 25 Jan 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Conserved Hypothetical Protein, Pyrococcus Furiosus, Hyperthermophile, Structural Genomics, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Zhao, J. Chang, J. Habel, H. Xu, L. Chen, D. Lee, D. Nguyen, S. -H. Chang, P. Horanyi, Q. Florence, W. Tempel, W. Zhou, D. Lin, H. Zhang, J. Praissman, F. E. Jenney Jr. , M. W. W. Adams, Z. -J. Liu, J. P. Rose, B. -C. Wang
Conserved Hypothetical Protein Pfu-723267-001 From Pyrococcus Furiosus
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1COA1Ligand/IonCOENZYME A
2MSE1Mod. Amino AcidSELENOMETHIONINE
3SCN1Ligand/IonTHIOCYANATE ION
4UNX8Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:17 , GLN A:92 , CYS A:116 , ILE A:117 , MSE A:118 , COA A:201BINDING SITE FOR RESIDUE SCN A 202
2AC2SOFTWAREGLY A:13 , SER A:15 , LYS A:20 , TYR A:21 , VAL A:39 , ASN A:40 , PRO A:41 , ASN A:42 , TYR A:43 , VAL A:68 , VAL A:69 , PRO A:70 , VAL A:73 , GLN A:92 , PRO A:93 , GLY A:94 , CYS A:116 , SCN A:202 , HOH A:308 , HOH A:310 , HOH A:311 , HOH A:312 , HOH A:323BINDING SITE FOR RESIDUE COA A 201
3AC3SOFTWAREASN A:17BINDING SITE FOR RESIDUE UNX A 402
4AC4SOFTWAREGLU A:35 , GLU A:45 , GLY A:48 , HOH A:304 , UNX A:404BINDING SITE FOR RESIDUE UNX A 403
5AC5SOFTWAREGLU A:35 , LEU A:37 , GLY A:48 , UNX A:403 , UNX A:405BINDING SITE FOR RESIDUE UNX A 404
6AC6SOFTWAREVAL A:36 , LEU A:37 , UNX A:404 , UNX A:406BINDING SITE FOR RESIDUE UNX A 405
7AC7SOFTWAREGLU A:35 , VAL A:36 , UNX A:405 , UNX A:407BINDING SITE FOR RESIDUE UNX A 406
8AC8SOFTWARELEU A:30 , HOH A:321 , UNX A:406 , UNX A:408BINDING SITE FOR RESIDUE UNX A 407
9AC9SOFTWAREUNX A:407BINDING SITE FOR RESIDUE UNX A 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Y81)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Y81)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Y81)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Y81)

(-) Exons   (0, 0)

(no "Exon" information available for 1Y81)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:116
 aligned with Q8U2V3_PYRFU | Q8U2V3 from UniProtKB/TrEMBL  Length:130

    Alignment length:116
                                    15        25        35        45        55        65        75        85        95       105       115      
         Q8U2V3_PYRFU     6 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEYSFGRCIMVET 121
               SCOP domains d1y81a1 A:6-121 Hypothetical protein PF0725                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -CoA_binding_2-1y81A01 A:7-121                                                                                       Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhh..eeeee.....ee..ee...hhhhh.....eeee..hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhh.eee...hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1y81 A   6 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEYSFGRCImVET 121
                                    15        25        35        45        55        65        75        85        95       105       115  |   
                                                                                                                                          118-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Y81)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q8U2V3_PYRFU | Q8U2V3)
molecular function
    GO:0048037    cofactor binding    Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate.

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  Cis Peptide Bonds
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  1y81
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 Related Entries

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