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(-) Description

Title :  SOLUTION STRUCTURE OF A TWO-REPEAT FRAGMENT OF MAJOR VAULT PROTEIN
 
Authors :  G. Kozlov, O. Vavelyuk, O. Minailiuc, D. Banville, K. Gehring, I. Ekiel
Date :  10 Dec 04  (Deposition) - 20 Dec 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Structural Repeats, Beta-Sheet Modules, Structural Protein, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Kozlov, O. Vavelyuk, O. Minailiuc, D. Banville, K. Gehring, I. Ekiel
Solution Structure Of A Two-Repeat Fragment Of Major Vault Protein.
J. Mol. Biol. V. 356 444 2006
PubMed-ID: 16373071  |  Reference-DOI: 10.1016/J.JMB.2005.11.064
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MAJOR VAULT PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPGEX-4T-1
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentDOMAINS 3-4 OF MVP REPEATS (RESIDUES 113-221)
    GeneMVP
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMVP, LUNG RESISTANCE-RELATED PROTEIN

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1Y7X)

(-) Sites  (0, 0)

(no "Site" information available for 1Y7X)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Y7X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1Y7X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Y7X)

(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MVPPS51224 MVP (vault) repeat profile.MVP_HUMAN4-54
117-169
56-116
170-222
223-277
279-327
328-383
384-437
  2-
A:9-61
-
A:62-113
-
-
-
-

(-) Exons   (3, 3)

NMR Structure (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003953531bENSE00001521447chr16:29831788-2983183144MVP_HUMAN-00--
1.2aENST000003953532aENSE00001521444chr16:29841795-29841995201MVP_HUMAN1-42420--
1.3bENST000003953533bENSE00000944368chr16:29842199-29842394196MVP_HUMAN42-107660--
1.4ENST000003953534ENSE00000681473chr16:29845054-29845177124MVP_HUMAN108-149421A:2-4140
1.5ENST000003953535ENSE00000681478chr16:29845256-29845387132MVP_HUMAN149-193451A:41-8545
1.7aENST000003953537aENSE00001022292chr16:29847025-2984711995MVP_HUMAN193-224321A:85-11329
1.8ENST000003953538ENSE00001710421chr16:29848043-29848279237MVP_HUMAN225-303790--
1.9ENST000003953539ENSE00001644953chr16:29851499-29851780282MVP_HUMAN304-397940--
1.10ENST0000039535310ENSE00001604276chr16:29852917-29853161245MVP_HUMAN398-479820--
1.11ENST0000039535311ENSE00001686549chr16:29853236-29853433198MVP_HUMAN479-545670--
1.12ENST0000039535312ENSE00001668720chr16:29855814-29856200387MVP_HUMAN545-6741300--
1.13ENST0000039535313ENSE00001781320chr16:29857184-29857300117MVP_HUMAN674-713400--
1.14ENST0000039535314ENSE00001706097chr16:29857479-29857605127MVP_HUMAN713-755430--
1.15ENST0000039535315ENSE00001783042chr16:29858518-29858706189MVP_HUMAN756-818630--
1.16aENST0000039535316aENSE00001168206chr16:29859083-29859341259MVP_HUMAN819-893750--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:113
 aligned with MVP_HUMAN | Q14764 from UniProtKB/Swiss-Prot  Length:893

    Alignment length:120
                                   111       121       131       141       151       161       171       181       191       201       211       221
            MVP_HUMAN   102 GEVLEKDITPLQVVLPNTALHLKALLDFEDKDGDKVVAGDEWLFEGPGTYIPRKEVEVVEIIQATIIRQNQALRLRARKECWDRDGKERVTGEEWLVTTVGAYLPAVFEEVLDLVDAVIL 221
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ---------------------------------------------------------------Vault-1y7xA01 A:57-99                      -------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------Vault-1y7xA02 A:57-99                      -------------- Pfam domains (2)
         Sec.struct. author .-------..........eeeeee..ee.......ee..eeeeee.hhhh.....eeeeeee........eeeeeee................eeee...........eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE MVP  PDB: -    MVP  PDB: A:9-61 UniProt: 117-169                    MVP  PDB: A:62-113 UniProt: 170-222                  PROSITE
           Transcript 1 (1) 1.3b  Exon 1.4  PDB: A:2-41 UniProt: 108-149    -------------------------------------------Exon 1.7a  PDB: A:85-113      Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.5  PDB: A:41-85 UniProt: 149-193      ---------------------------- Transcript 1 (2)
                 1y7x A   1 G-------SHMQVVLPNTALHLKALLDFEDKDGDKVVAGDEWLFEGPGTYIPRKEVEVVEIIQATIIRQNQALRLRARKECWDRDGKERVTGEEWLVTTVGAYLPAVFEEVLDLVDAVIL 113
                            |       |3        13        23        33        43        53        63        73        83        93       103       113
                            |       2                                                                                                               
                            1                                                                                                                       

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1Y7X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Y7X)

(-) Pfam Domains  (1, 2)

NMR Structure

(-) Gene Ontology  (18, 18)

NMR Structure(hide GO term definitions)
Chain A   (MVP_HUMAN | Q14764)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
    GO:0019903    protein phosphatase binding    Interacting selectively and non-covalently with any protein phosphatase.
biological process
    GO:0038127    ERBB signaling pathway    A series of molecular signals initiated by binding of a ligand to a member of the ERBB family of receptor tyrosine kinases on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0051028    mRNA transport    The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0031953    negative regulation of protein autophosphorylation    Any process that stops, prevents or decreases the rate of the phosphorylation by a protein of one or more of its own residues.
    GO:0061099    negative regulation of protein tyrosine kinase activity    Any process that decreases the rate, frequency, or extent of protein tyrosine kinase activity.
    GO:0023057    negative regulation of signaling    Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005643    nuclear pore    Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.

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