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(-) Description

Title :  1.7 A CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION SA2161 FROM METICILLIN-RESISTANT STAPHYLOCOCCUS AUREUS, PROBABLE ACETYLTRANSFERASE
 
Authors :  Y. Qiu, R. Zhang, F. Collart, D. Holzle, A. Joachimiak, A. Kossiakoff, M Center For Structural Genomics (Mcsg)
Date :  09 Dec 04  (Deposition) - 25 Jan 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Hypothetical Protein, Protein Structure Initiative, Psi, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Qiu, R. Zhang, F. Collart, D. Holzle, A. Joachimiak, A. Kossiakoff, Midwest Center For Structural Genomics (Mcsg)
1. 7A Crystal Structure Of Hypothetical Protein Sa2161 From Meticillin-Resistant Staphylococcus Aureus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN SA2161
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PMGSC7
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 22)

Asymmetric/Biological Unit (2, 22)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
2PO48Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL B:71 , GLN B:76 , GLY B:77 , TYR B:80 , GLY B:81 , PO4 B:502 , HOH B:513 , HOH B:563 , HOH B:569 , HOH B:586BINDING SITE FOR RESIDUE PO4 B 501
2AC2SOFTWAREGLN B:78 , ALA B:79 , TYR B:80 , GLY B:81 , SER B:82 , LYS B:116 , PO4 B:501 , HOH B:620BINDING SITE FOR RESIDUE PO4 B 502
3AC3SOFTWAREGLN A:78 , ALA A:79 , TYR A:80 , GLY A:81 , SER A:82 , LEU A:113 , PO4 A:504BINDING SITE FOR RESIDUE PO4 A 503
4AC4SOFTWAREVAL A:71 , GLN A:76 , GLY A:77 , GLY A:81 , PO4 A:503 , HOH A:513 , HOH A:539 , HOH A:586BINDING SITE FOR RESIDUE PO4 A 504
5AC5SOFTWAREPO4 A:506BINDING SITE FOR RESIDUE PO4 A 505
6AC6SOFTWAREGLU A:12 , ALA A:16 , PO4 A:505 , HOH A:561 , HOH A:595BINDING SITE FOR RESIDUE PO4 A 506
7AC7SOFTWAREPO4 B:508BINDING SITE FOR RESIDUE PO4 B 507
8AC8SOFTWAREPO4 B:507BINDING SITE FOR RESIDUE PO4 B 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Y7R)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:123 -Pro A:124
2Glu B:123 -Pro B:124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Y7R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Y7R)

(-) Exons   (0, 0)

(no "Exon" information available for 1Y7R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
 aligned with A0A0H3JSZ8_S | A0A0H3JSZ8 from UniProtKB/TrEMBL  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
         A0A0H3JSZ8_S     1 MVKVTYDIPTCEDYCALRINAGMSPKTREAAEKGLPNALFTVTLYDKDRLIGMGRVIGDGGTVFQIVDIAVSKSYQGQDYGSLIMEHIMKYIKNVSVESAYVSLIADYPADKLYAKFGFMPTEPDSGGMYIKY 133
               SCOP domains d1y7ra1 A:1-133 Hypothetical protein SA2161                                                                                           SCOP domains
               CATH domains -1y7rA00 A:2-133  [code=3.40.630.30, no name defined]                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhhhhhhhhhhh.....hhhhhhhhhhhh.eeeeeee..eeeeeeeeee....eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhh...ee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y7r A   1 mVKVTYDIPTCEDYCALRINAGmSPKTREAAEKGLPNALFTVTLYDKDRLIGmGRVIGDGGTVFQIVDIAVLKSYQGQAYGSLImEHImKYIKNVSVESVYVSLIADYPADKLYVKFGFmPTEPDSGGmYIKY 133
                            |       10        20  |     30        40        50  |     60        70        80    |   90       100       110       120       130   
                            |                    23-MSE                        53-MSE                          85-MSE                            120-MSE  129-MSE
                            1-MSE                                                                                  89-MSE                                        


Chain B from PDB  Type:PROTEIN  Length:133
 aligned with A0A0H3JSZ8_S | A0A0H3JSZ8 from UniProtKB/TrEMBL  Length:133

    Alignment length:133
                                    10        20        30        40        50        60        70        80        90       100       110       120       130   
         A0A0H3JSZ8_S     1 MVKVTYDIPTCEDYCALRINAGMSPKTREAAEKGLPNALFTVTLYDKDRLIGMGRVIGDGGTVFQIVDIAVSKSYQGQDYGSLIMEHIMKYIKNVSVESAYVSLIADYPADKLYAKFGFMPTEPDSGGMYIKY 133
               SCOP domains d1y7rb_ B: Hypothetical protein SA2161                                                                                                SCOP domains
               CATH domains -1y7rB00 B:2-133  [code=3.40.630.30, no name defined]                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....hhhhhhhhhhhh.....hhhhhhhhhhhh.eeeeeee..eeeeeeeeee....eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhh..ee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y7r B   1 mVKVTYDIPTCEDYCALRINAGmSPKTREAAEKGLPNALFTVTLYDKDRLIGmGRVIGDGGTVFQIVDIAVLKSYQGQAYGSLImEHImKYIKNVSVESVYVSLIADYPADKLYVKFGFmPTEPDSGGmYIKY 133
                            |       10        20  |     30        40        50  |     60        70        80    |   90       100       110       120       130   
                            |                    23-MSE                        53-MSE                          85-MSE                            120-MSE  129-MSE
                            1-MSE                                                                                  89-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1Y7R)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1Y7R)

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