1XUQ - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF SODA-1 (BA4499) FROM BACILLUS ANTHRACIS AT 1.8A RESOLUTION.

Authors :   I. W. Boucher, V. M. Levdikov, E. V. Blagova, M. J. Fogg, J. A. Brannigan, A. J. Wilkinson, K. S. Wilson

Date :   26 Oct 04 (Deposition) - 19 Jul 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Soda-1; Superoxide Dismutase; Bacillus Anthracis; Ba4499; Spine, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. W. Boucher, A. K. Kalliomaa, V. M. Levdikov, E. V. Blagova, M. J. Fogg, J. A. Brannigan, K. S. Wilson, A. J. Wilkinson
Structures Of Two Superoxide Dismutases From Bacillus Anthracis Reveal A Novel Active Centre.
Acta Crystallogr. , Sect. F V. 61 621 2005
PubMed-ID: 16511113 | Reference-DOI: 10.1107/S1744309105017380
(for further references see the PDB file header)

Molecule 1 - SUPEROXIDE DISMUTASE
	Chains	:	A, B
	EC Number	:	1.15.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PET-YSBLIC
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	SODA1, SODA-1
	Organism Scientific	:	BACILLUS ANTHRACIS
	Organism Taxid	:	1392
	Synonym	:	SODA-2

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	MN	2	Ligand/Ion	MANGANESE (II) ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS B:28 , HIS B:83 , ASP B:165 , HIS B:169 , HOH B:206	BINDING SITE FOR RESIDUE MN B 204
2	AC2	SOFTWARE	HIS A:28 , HIS A:83 , ASP A:165 , HIS A:169 , HOH A:206 , HOH A:365	BINDING SITE FOR RESIDUE MN A 204

(no "SS Bond" information available for 1XUQ)

Asymmetric/Biological Unit

No.	Residues
1	Glu A:17	-	Pro A:18
2	Glu B:17	-	Pro B:18

(no "SAP(SNP)/Variant" information available for 1XUQ)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SOD_MN	PS00088	Manganese and iron superoxide dismutases signature.	SODM1_BACAN	165-172	2	A:165-172 B:165-172

(no "Exon" information available for 1XUQ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:200
 aligned with SODM1_BACAN | Q81LW0 from UniProtKB/Swiss-Prot  Length:203

    Alignment length:200
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202
          SODM1_BACAN     3 KHELPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQEA 202
               SCOP domains d1xuqa1 A:3-92 automated matches                                                          d1xuqa2 A:93-202 automated matches                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..eeeeeeee...hhhhhh.eeeeeee.hhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------SOD_MN  ------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xuq A   3 KHELPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQEA 202
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202

Chain B from PDB  Type:PROTEIN  Length:200
 aligned with SODM1_BACAN | Q81LW0 from UniProtKB/Swiss-Prot  Length:203

    Alignment length:200
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202
          SODM1_BACAN     3 KHELPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQEA 202
               SCOP domains d1xuqb1 B:3-92 automated matches                                                          d1xuqb2 B:93-202 automated matches                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Sod_Fe_N-1xuqB03 B:3-91                                                                  ----Sod_Fe_C-1xuqB01 B:96-199                                                                               --- Pfam domains (1)
           Pfam domains (2) Sod_Fe_N-1xuqB04 B:3-91                                                                  ----Sod_Fe_C-1xuqB02 B:96-199                                                                               --- Pfam domains (2)
         Sec.struct. author ..................hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....eeeeeee...hhhhhh.eeeeeee.hhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------SOD_MN  ------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xuq B   3 KHELPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQEA 202
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 1XUQ)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Sod_Fe_C] (46)

Family: Sod_Fe_C (46)

Bacillus anthracis (1)

1a	Sod_Fe_C-1xuqB01	B:96-199
1b	Sod_Fe_C-1xuqB02	B:96-199

Clan: no clan defined [family: Sod_Fe_N] (46)

Family: Sod_Fe_N (46)

Bacillus anthracis (1)

2a	Sod_Fe_N-1xuqB03	B:3-91
2b	Sod_Fe_N-1xuqB04	B:3-91

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (SODM1_BACAN | Q81LW0)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0004784	superoxide dismutase activity	Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0019430	removal of superoxide radicals	Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2).
	GO:0006801	superoxide metabolic process	The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Glu A:17 - Pro A:18	[ RasMol ]
		Glu B:17 - Pro B:18	[ RasMol ]

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	1xuq
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

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