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(-) Description

Title :  THEORETICAL MODEL OF THE LIGAND-BINDING REGION OF A GLYCOPROTEIN HORMONE RECEPTOR
 
Authors :  X. Jiang, M. Dreano, D. R. Buckler, S. Cheng, A. Ythier, H. Wu, W. A. Hendrickson, N. El Tayar
Date :  27 Dec 96  (Deposition) - 15 May 97  (Release) - 01 Apr 03  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Glycoprotein Hormone Receptor, Glycoprotein, Phosphorylation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. Jiang, M. Dreano, D. R. Buckler, S. Cheng, A. Ythier, H. Wu, W. A. Hendrickson, N. El Tayar
Structural Predictions For The Ligand-Binding Region Of Glycoprotein Hormone Receptors And The Nature Of Hormone-Receptor Interactions.
Structure V. 3 1341 1995
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - THYROTROPIN RECEPTOR COMPOUND
    ChainsA
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS

 Structural Features

(-) Chains, Units

  
Theoretical Model 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1XUM)

(-) Sites  (0, 0)

(no "Site" information available for 1XUM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XUM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XUM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (6, 6)

Theoretical Model (6, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_011520R109QTSHR_HUMANDisease (CHNG1)  ---AR109Q
2UniProtVAR_011521P162ATSHR_HUMANDisease (CHNG1)121908863AP162A
3UniProtVAR_011522I167NTSHR_HUMANDisease (CHNG1)  ---AI167N
4UniProtVAR_003566K183RTSHR_HUMANDisease (HTFG)  ---AK183R
5UniProtVAR_003567F197ITSHR_HUMANUnclassified  ---AF197I
6UniProtVAR_003568D219ETSHR_HUMANUnclassified  ---AD219E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XUM)

(-) Exons   (9, 9)

Theoretical Model (9, 9)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000002981711bENSE00001274344chr14:81421869-81422194326TSHR_HUMAN1-57571A:54-574
1.2bENST000002981712bENSE00001135626chr14:81528492-8152856372TSHR_HUMAN57-81251A:57-8125
1.3ENST000002981713ENSE00001092839chr14:81534598-8153467275TSHR_HUMAN81-106261A:81-10626
1.4ENST000002981714ENSE00001135605chr14:81554298-8155437275TSHR_HUMAN106-131261A:106-13126
1.5ENST000002981715ENSE00001315993chr14:81557413-8155748775TSHR_HUMAN131-156261A:131-15626
1.6ENST000002981716ENSE00001092852chr14:81558875-8155895278TSHR_HUMAN156-182271A:156-18227
1.7ENST000002981717ENSE00001311920chr14:81562983-8156305169TSHR_HUMAN182-205241A:182-20524
1.8ENST000002981718ENSE00001135568chr14:81574719-8157479678TSHR_HUMAN205-231271A:205-23127
1.10ENST0000029817110ENSE00001318726chr14:81606023-81606211189TSHR_HUMAN231-294641A:231-2366
1.11aENST0000029817111aENSE00001328054chr14:81609284-816126463363TSHR_HUMAN294-7644710--

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:183
 aligned with TSHR_HUMAN | P16473 from UniProtKB/Swiss-Prot  Length:764

    Alignment length:183
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233   
           TSHR_HUMAN    54 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 236
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.....................eee......................eee............hhh.......eee........hhhhhhhh......eee............hhhh.......eee....................eee............hhh........eee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------Q----------------------------------------------------A----N---------------R-------------I---------------------E----------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.1b-----------------------Exon 1.3  PDB: A:81-106   ------------------------Exon 1.5  PDB: A:131-156  -------------------------Exon 1.7  PDB: A:182-205-------------------------1.10   Transcript 1 (1)
           Transcript 1 (2) ---Exon 1.2b  PDB: A:57-81  ------------------------Exon 1.4  PDB: A:106-131  ------------------------Exon 1.6  PDB: A:156-182   ----------------------Exon 1.8  PDB: A:205-231   ----- Transcript 1 (2)
                 1xum A  54 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKSLAFSNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYDFFGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 236
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1XUM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1XUM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1XUM)

(-) Gene Ontology  (21, 21)

Theoretical Model(hide GO term definitions)
Chain A   (TSHR_HUMAN | P16473)
molecular function
    GO:0008528    G-protein coupled peptide receptor activity    Combining with a peptide and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.
    GO:0004930    G-protein coupled receptor activity    Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016500    protein-hormone receptor activity    Combining with a protein hormone to initiate a change in cell activity.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0004996    thyroid-stimulating hormone receptor activity    Combining with thyroid-stimulating hormone to initiate a change in cell activity.
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0007187    G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger    The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds with activation or inhibition of a nucleotide cyclase activity and a subsequent change in the concentration of a cyclic nucleotide.
    GO:0007190    activation of adenylate cyclase activity    Any process that initiates the activity of the inactive enzyme adenylate cyclase.
    GO:0007189    adenylate cyclase-activating G-protein coupled receptor signaling pathway    The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds through activation of adenylyl cyclase activity and a subsequent increase in the concentration of cyclic AMP (cAMP).
    GO:0007267    cell-cell signaling    Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions.
    GO:0009755    hormone-mediated signaling pathway    A series of molecular signals mediated by the detection of a hormone.
    GO:0007399    nervous system development    The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0038194    thyroid-stimulating hormone signaling pathway    The series of molecular signals generated as a consequence of thyroid-stimulating hormone (thyrotropin) binding to a cell surface receptor. The pathway proceeds with the receptor transmitting the signal to a heterotrimeric G-protein complex and ends with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043235    receptor complex    Any protein complex that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.

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        TSHR_HUMAN | P164732xwt 3g04

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