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(-) Description

Title :  CRYSTAL STRUCTURE OF UREIDOGLYCOLATE DEHYDROGENASE FROM ESCHERICHIA COLI
 
Authors :  K. R. Rajashankar, R. Kniewel, C. D. Lima, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  14 Oct 04  (Deposition) - 26 Oct 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Structural Genomics; Protein Structure Initiative; Nysgxrc; T1456; Alld; Glxb8; B0517; Ureidoglycolate Dehydrogenase, Psi, New York Sgx Research Center For Structural Genomics, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. R. Rajashankar, R. Kniewel, C. D. Lima
Crystal Structure Of Ureidoglycolate Dehydrogenase From Escherichia Coli
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UREIDOGLYCOLATE DEHYDROGENASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 1.1.1.154
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET T7
    Expression System Strain: B834, DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ALLD
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 96)

Asymmetric Unit (1, 96)
No.NameCountTypeFull Name
1MSE96Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1XRH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XRH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XRH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XRH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XRH)

(-) Exons   (0, 0)

(no "Exon" information available for 1XRH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:343
 aligned with ALLD_ECOLI | P77555 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:343
                             1                                                                                                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339   
           ALLD_ECOLI     - -MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYE 342
               SCOP domains d1xrha_ A: Ureidoglycolate dehydrogenase AllD                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeee....eeeeeeeeehhhhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhhhhhhh..eeeeee....................eeeeee.....eeeeee.....hhhhhhhhhh.........ee..............ee....hhhhhhhhhhhhhhhhhhhh..hhhhh............eeeeeeee.hhhh.hhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhheeehhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xrh A   2 SSKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKmGmEHAIKTAQQNGVAVVGISRmGHSGAISYFVQQAARAGFIGISmCQSDPmVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDmATTVQAWGKVLDARSRNmSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLmmmIDVLSGVLLGLPFGRQVSSmYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTmRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYE 344
                                    11        21        31        41        51        61        71        81        91  | |  101       111    |  121       131       141   |   151       161       171     | 181       191   |   201       211       221       231||     241       251 |     261       271       281       291       301       311       321       331       341   
                                                                                                                       94-MSE               116-MSE                139-MSE |                             177-MSE           195-MSE                             231-MSE               253-MSE                             289-MSE                                                   
                                                                                                                         96-MSE                                          145-MSE                                                                                232-MSE                                                                                                            
                                                                                                                                                                                                                                                                 233-MSE                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:343
 aligned with ALLD_ECOLI | P77555 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:343
                             1                                                                                                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339   
           ALLD_ECOLI     - -MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYE 342
               SCOP domains d1xrhb_ B: Ureidoglycolate dehydrogenase AllD                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee..eeeeeeeeehhhhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhhhhhhh..eeeeee...eee.........ee...eeeeee.....eeeeee.....hhhhhhhhhhh........eee...........eeee....hhhhhhhhhhhhhhhhhhhh..hhhhh............eeeeeeee.hhhh.hhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhheeehhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xrh B   2 SSKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKmGmEHAIKTAQQNGVAVVGISRmGHSGAISYFVQQAARAGFIGISmCQSDPmVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDmATTVQAWGKVLDARSRNmSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLmmmIDVLSGVLLGLPFGRQVSSmYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTmRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYE 344
                                    11        21        31        41        51        61        71        81        91  | |  101       111    |  121       131       141   |   151       161       171     | 181       191   |   201       211       221       231||     241       251 |     261       271       281       291       301       311       321       331       341   
                                                                                                                       94-MSE               116-MSE                139-MSE |                             177-MSE           195-MSE                             231-MSE               253-MSE                             289-MSE                                                   
                                                                                                                         96-MSE                                          145-MSE                                                                                232-MSE                                                                                                            
                                                                                                                                                                                                                                                                 233-MSE                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:344
 aligned with ALLD_ECOLI | P77555 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:344
                              1                                                                                                                                                                                                                                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338    
           ALLD_ECOLI     - --MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYE 342
               SCOP domains d1xrhc_ C: Ureidoglycolate dehydrogenase AllD                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeehhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee..eeeeeeeeehhhhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhhhhhhh..eeeeee....................eeeeee.....eeeeee.....hhhhhhhhhhhh.......ee..............ee....hhhhhhhhhhhhhhhh......hhhhh............eeeeeeee.hhhh.hhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhheeeehhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xrh C   1 SSSKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKmGmEHAIKTAQQNGVAVVGISRmGHSGAISYFVQQAARAGFIGISmCQSDPmVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDmATTVQAWGKVLDARSRNmSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLmmmIDVLSGVLLGLPFGRQVSSmYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTmRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYE 344
                                    10        20        30        40        50        60        70        80        90   | | 100       110     | 120       130       140    |  150       160       170      |180       190    |  200       210       220       230|||    240       250  |    260       270       280       290       300       310       320       330       340    
                                                                                                                        94-MSE               116-MSE                139-MSE |                             177-MSE           195-MSE                             231-MSE               253-MSE                             289-MSE                                                   
                                                                                                                          96-MSE                                          145-MSE                                                                                232-MSE                                                                                                            
                                                                                                                                                                                                                                                                  233-MSE                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:342
 aligned with ALLD_ECOLI | P77555 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:342
                             1                                                                                                                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339  
           ALLD_ECOLI     - -MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSY 341
               SCOP domains d1xrhd_ D: Ureidoglycolate dehydrogenase AllD                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.........eeeeee..eeeeeeeeehhhhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhhhhhhh..eeeeee....................eeeeee.....eeeeee.....hhhhhhhhhhh........ee........hhhhh.ee....hhhhhhhhhhhhhhhhhhhh..hhhhh............eeeeeeee.hhhh.hhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhheeehhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1xrh D   2 SSKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKmGmEHAIKTAQQNGVAVVGISRmGHSGAISYFVQQAARAGFIGISmCQSDPmVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDmATTVQAWGKVLDARSRNmSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLmmmIDVLSGVLLGLPFGRQVSSmYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTmRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSY 343
                                    11        21        31        41        51        61        71        81        91  | |  101       111    |  121       131       141   |   151       161       171     | 181       191   |   201       211       221       231||     241       251 |     261       271       281       291       301       311       321       331       341  
                                                                                                                       94-MSE               116-MSE                139-MSE |                             177-MSE           195-MSE                             231-MSE               253-MSE                             289-MSE                                                  
                                                                                                                         96-MSE                                          145-MSE                                                                                232-MSE                                                                                                           
                                                                                                                                                                                                                                                                 233-MSE                                                                                                          


Chain E from PDB  Type:PROTEIN  Length:343
 aligned with ALLD_ECOLI | P77555 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:343
                             1                                                                                                                                                                                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339   
           ALLD_ECOLI     - -MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYE 342
               SCOP domains d1xrhe_ E: Ureidoglycolate dehydrogenase AllD                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.........eeeeee..eeeeeeeeehhhhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhhhhhhh..eeeeee....................eeeeee.....eeeeee.....hhhhhhhhhh.........ee........hhhhh.ee....hhhhhhhhhhhhhhhhhhhh..hhhhh............eeeeeeee.hhhh.hhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhheeehhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xrh E   2 SSKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKmGmEHAIKTAQQNGVAVVGISRmGHSGAISYFVQQAARAGFIGISmCQSDPmVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDmATTVQAWGKVLDARSRNmSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLmmmIDVLSGVLLGLPFGRQVSSmYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTmRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYE 344
                                    11        21        31        41        51        61        71        81        91  | |  101       111    |  121       131       141   |   151       161       171     | 181       191   |   201       211       221       231||     241       251 |     261       271       281       291       301       311       321       331       341   
                                                                                                                       94-MSE               116-MSE                139-MSE |                             177-MSE           195-MSE                             231-MSE               253-MSE                             289-MSE                                                   
                                                                                                                         96-MSE                                          145-MSE                                                                                232-MSE                                                                                                            
                                                                                                                                                                                                                                                                 233-MSE                                                                                                           


Chain F from PDB  Type:PROTEIN  Length:339
 aligned with ALLD_ECOLI | P77555 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:339
                             1                                                                                                                                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329         
           ALLD_ECOLI     - -MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYN 338
               SCOP domains d1xrhf_ F: Ureidoglycolate dehydrogenase AllD                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee..eeeeeeeeehhhhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhhhhhhh..eeeeee....................eeeeee.....eeeeee.....hhhhhhhhhhh........ee..............ee....hhhhhhhhhhhhhhhhhhhh..hhhhh............eeeeeeee.hhhh.hhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhheeehhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xrh F   2 SSKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKmGmEHAIKTAQQNGVAVVGISRmGHSGAISYFVQQAARAGFIGISmCQSDPmVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDmATTVQAWGKVLDARSRNmSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLmmmIDVLSGVLLGLPFGRQVSSmYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTmRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYN 340
                                    11        21        31        41        51        61        71        81        91  | |  101       111    |  121       131       141   |   151       161       171     | 181       191   |   201       211       221       231||     241       251 |     261       271       281       291       301       311       321       331         
                                                                                                                       94-MSE               116-MSE                139-MSE |                             177-MSE           195-MSE                             231-MSE               253-MSE                             289-MSE                                               
                                                                                                                         96-MSE                                          145-MSE                                                                                232-MSE                                                                                                        
                                                                                                                                                                                                                                                                 233-MSE                                                                                                       


Chain G from PDB  Type:PROTEIN  Length:341
 aligned with ALLD_ECOLI | P77555 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:341
                             1                                                                                                                                                                                                                                                                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339 
           ALLD_ECOLI     - -MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTS 340
               SCOP domains d1xrhg_ G: Ureidoglycolate dehydrogenase AllD                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeee..eeeee....hhhhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhhhhhhh..eeeeee....................eeeeee.....eeeeee.....hhhhhhhhhhh........ee........hhhhh.ee....hhhhhhhhhhhhhhhh......hhhhh............eeeeeeee.hhhh.hhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhheeehhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xrh G   2 SSKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKmGmEHAIKTAQQNGVAVVGISRmGHSGAISYFVQQAARAGFIGISmCQSDPmVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDmATTVQAWGKVLDARSRNmSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLmmmIDVLSGVLLGLPFGRQVSSmYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTmRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTS 342
                                    11        21        31        41        51        61        71        81        91  | |  101       111    |  121       131       141   |   151       161       171     | 181       191   |   201       211       221       231||     241       251 |     261       271       281       291       301       311       321       331       341 
                                                                                                                       94-MSE               116-MSE                139-MSE |                             177-MSE           195-MSE                             231-MSE               253-MSE                             289-MSE                                                 
                                                                                                                         96-MSE                                          145-MSE                                                                                232-MSE                                                                                                          
                                                                                                                                                                                                                                                                 233-MSE                                                                                                         


Chain H from PDB  Type:PROTEIN  Length:339
 aligned with ALLD_ECOLI | P77555 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:339
                             1                                                                                                                                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329         
           ALLD_ECOLI     - -MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYN 338
               SCOP domains d1xrhh_ H: Ureidoglycolate dehydrogenase AllD                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --Ldh_2-1xrhH01 H:4-336                                                                                                                                                                                                                                                                                                                        ---- Pfam domains (1)
           Pfam domains (2) --Ldh_2-1xrhH02 H:4-336                                                                                                                                                                                                                                                                                                                        ---- Pfam domains (2)
           Pfam domains (3) --Ldh_2-1xrhH03 H:4-336                                                                                                                                                                                                                                                                                                                        ---- Pfam domains (3)
           Pfam domains (4) --Ldh_2-1xrhH04 H:4-336                                                                                                                                                                                                                                                                                                                        ---- Pfam domains (4)
           Pfam domains (5) --Ldh_2-1xrhH05 H:4-336                                                                                                                                                                                                                                                                                                                        ---- Pfam domains (5)
           Pfam domains (6) --Ldh_2-1xrhH06 H:4-336                                                                                                                                                                                                                                                                                                                        ---- Pfam domains (6)
           Pfam domains (7) --Ldh_2-1xrhH07 H:4-336                                                                                                                                                                                                                                                                                                                        ---- Pfam domains (7)
           Pfam domains (8) --Ldh_2-1xrhH08 H:4-336                                                                                                                                                                                                                                                                                                                        ---- Pfam domains (8)
         Sec.struct. author .eeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.........eeeeee..eeeeeeeeehhhhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhhhhhhh..eeeeee....................eeeeee.....eeeeee.....hhhhhhhhhhh........ee..............ee....hhhhhhhhhhhhhhhh......hhhhh............eeeeeeee.hhhh.hhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhheeehhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xrh H   2 SSKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKmGmEHAIKTAQQNGVAVVGISRmGHSGAISYFVQQAARAGFIGISmCQSDPmVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDmATTVQAWGKVLDARSRNmSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLmmmIDVLSGVLLGLPFGRQVSSmYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTmRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYN 340
                                    11        21        31        41        51        61        71        81        91  | |  101       111    |  121       131       141   |   151       161       171     | 181       191   |   201       211       221       231||     241       251 |     261       271       281       291       301       311       321       331         
                                                                                                                       94-MSE               116-MSE                139-MSE |                             177-MSE           195-MSE                             231-MSE               253-MSE                             289-MSE                                               
                                                                                                                         96-MSE                                          145-MSE                                                                                232-MSE                                                                                                        
                                                                                                                                                                                                                                                                 233-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1XRH)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: no clan defined [family: Ldh_2] (7)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (ALLD_ECOLI | P77555)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0009040    ureidoglycolate dehydrogenase activity    Catalysis of the reaction: (S)-ureidoglycolate + NAD(P)+ = oxalureate + NAD(P)H + H+.
biological process
    GO:0009442    allantoin assimilation pathway    The pathways by which allantoin is processed and converted to ureidoglycolate, and then into metabolically useful substrates. E. coli are able to utilize allantoin as a sole nitrogen source under anaerobic conditions by converting it to ureidoglycolate; this may be further metabolized to produce glyoxylate and thence 3-phosphoglycerate, or alternatively oxidized to oxolureate, which can converted into oxamate and carbamoylphosphate. This may then be further metabolized to CO2, NH4+ and ATP.
    GO:0000256    allantoin catabolic process    The chemical reactions and pathways resulting in the breakdown of allantoin, (2,5-dioxo-4-imidazolidinyl)urea.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006144    purine nucleobase metabolic process    The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1.1.1.154
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        ALLD_ECOLI | P77555: 4h8a

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