1XPJ - JenaLib

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Title :   CRYSTAL STRUCTURE OF MCSG TARGET APC26283 FROM VIBRIO CHOLERAE

Authors :   J. S. Brunzelle, G. Minasov, L. Shuvalova, F. R. Collart, W. F. Anderson Center For Structural Genomics (Mcsg)

Date :   08 Oct 04 (Deposition) - 19 Oct 04 (Release) - 26 Sep 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Structural Genomics, Hypothetical Protein, Mcsg, Protein Structure Initiative, Psi, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. S. Brunzelle, G. Minasov, L. Shuvalova, F. R. Collart, W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)
Crystal Structure Of Mcsg Target Apc26283 From Vibrio Cholerae
To Be Published
PubMed: search

Molecule 1 - HYPOTHETICAL PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21-DE3
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	VIBRIO CHOLERAE
	Organism Taxid	:	666

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 8)

No.	Name	Count	Type	Full Name
1	HG	4	Ligand/Ion	MERCURY (II) ION
2	TLA	4	Ligand/Ion	L(+)-TARTARIC ACID

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:90 , GLY A:91 , GLY A:94	BINDING SITE FOR RESIDUE HG A 401
2	AC2	SOFTWARE	CYS B:90 , GLY B:91 , GLY B:94	BINDING SITE FOR RESIDUE HG B 402
3	AC3	SOFTWARE	CYS C:90 , GLY C:91 , HIS C:92 , GLY C:94	BINDING SITE FOR RESIDUE HG C 403
4	AC4	SOFTWARE	ARG A:100 , CYS D:90 , GLY D:91 , GLY D:94	BINDING SITE FOR RESIDUE HG D 404
5	AC5	SOFTWARE	TYR B:20 , ALA B:48 , ARG B:49 , ASN B:50 , MET B:51 , ARG B:52 , THR B:53 , TRP B:89 , HOH B:434 , HOH B:446	BINDING SITE FOR RESIDUE TLA B 301
6	AC6	SOFTWARE	TYR C:20 , ALA C:48 , ARG C:49 , ASN C:50 , MET C:51 , ARG C:52 , THR C:53 , TRP C:89 , HOH C:452 , HOH C:458 , HOH C:459	BINDING SITE FOR RESIDUE TLA C 302
7	AC7	SOFTWARE	TYR A:20 , ALA A:48 , ARG A:49 , ASN A:50 , MET A:51 , ARG A:52 , THR A:53	BINDING SITE FOR RESIDUE TLA A 303
8	AC8	SOFTWARE	TYR D:20 , ALA D:48 , ARG D:49 , ASN D:50 , MET D:51 , ARG D:52 , THR D:53 , TRP D:89 , HOH D:448	BINDING SITE FOR RESIDUE TLA D 304

(no "SS Bond" information available for 1XPJ)

(no "Cis Peptide Bond" information available for 1XPJ)

(no "SAP(SNP)/Variant" information available for 1XPJ)

(no "PROSITE Motif" information available for 1XPJ)

(no "Exon" information available for 1XPJ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:124
 aligned with Q9KVB4_VIBCH | Q9KVB4 from UniProtKB/TrEMBL  Length:126

    Alignment length:124
                                    10        20        30        40        50        60        70        80        90       100       110       120    
         Q9KVB4_VIBCH     1 MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYIDDRAVRPSEFASMNLEEIHQLFEKEKS 124
               SCOP domains d1xpja_ A: Hypothetical protein VC0232                                                                                       SCOP domains
               CATH domains 1xpjA00 A:1-124  [code=3.40.50.1000, no name defined]                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee............hhhhh..hhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhhhhhhhh.....eeee.........eee...eehhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xpj A   1 MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYIDDRAVRPSEFASMNLEEIHQLFEKEKS 124
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain B from PDB  Type:PROTEIN  Length:123
 aligned with Q9KVB4_VIBCH | Q9KVB4 from UniProtKB/TrEMBL  Length:126

    Alignment length:123
                                    10        20        30        40        50        60        70        80        90       100       110       120   
         Q9KVB4_VIBCH     1 MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYIDDRAVRPSEFASMNLEEIHQLFEKEK 123
               SCOP domains d1xpjb_ B: Hypothetical protein VC0232                                                                                      SCOP domains
               CATH domains 1xpjB00 B:1-123  [code=3.40.50.1000, no name defined]                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee............hhhhh..hhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhhhh.....eee..........eee...eehhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xpj B   1 MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYIDDRAVRPSEFASMNLEEIHQLFEKEK 123
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain C from PDB  Type:PROTEIN  Length:123
 aligned with Q9KVB4_VIBCH | Q9KVB4 from UniProtKB/TrEMBL  Length:126

    Alignment length:123
                                    10        20        30        40        50        60        70        80        90       100       110       120   
         Q9KVB4_VIBCH     1 MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYIDDRAVRPSEFASMNLEEIHQLFEKEK 123
               SCOP domains d1xpjc_ C: Hypothetical protein VC0232                                                                                      SCOP domains
               CATH domains 1xpjC00 C:1-123  [code=3.40.50.1000, no name defined]                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee............hhhhh..hhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhhhh.....eee..........eee...eehhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xpj C   1 MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYIDDRAVRPSEFASMNLEEIHQLFEKEK 123
                                    10        20        30        40        50        60        70        80        90       100       110       120

Chain D from PDB  Type:PROTEIN  Length:123
 aligned with Q9KVB4_VIBCH | Q9KVB4 from UniProtKB/TrEMBL  Length:126

    Alignment length:123
                                    10        20        30        40        50        60        70        80        90       100       110       120   
         Q9KVB4_VIBCH     1 MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYIDDRAVRPSEFASMNLEEIHQLFEKEK 123
               SCOP domains d1xpjd_ D: Hypothetical protein VC0232                                                                                      SCOP domains
               CATH domains 1xpjD00 D:1-123  [code=3.40.50.1000, no name defined]                                                                       CATH domains
           Pfam domains (1) ---Hydrolase_3-1xpjD01 D:4-123                                                                                              Pfam domains (1)
           Pfam domains (2) ---Hydrolase_3-1xpjD02 D:4-123                                                                                              Pfam domains (2)
           Pfam domains (3) ---Hydrolase_3-1xpjD03 D:4-123                                                                                              Pfam domains (3)
           Pfam domains (4) ---Hydrolase_3-1xpjD04 D:4-123                                                                                              Pfam domains (4)
         Sec.struct. author ..eeee............hhhhh..hhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhhhhhhhh.....eeee.........eee...eehhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xpj D   1 MKKLIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEILVGKPWCGHDGFYIDDRAVRPSEFASMNLEEIHQLFEKEK 123
                                    10        20        30        40        50        60        70        80        90       100       110       120

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: HAD-like (349)

Superfamily: HAD-like (349)

Family: Hypothetical protein VC0232 (1)

Protein domain: Hypothetical protein VC0232 (1)

Vibrio cholerae [TaxId: 666] (1)

1a	d1xpja_	A:
1b	d1xpjb_	B:
1c	d1xpjc_	C:
1d	d1xpjd_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1000, no name defined] (211)

Vibrio cholerae. Organism_taxid: 666. (1)

1a	1xpjA00	A:1-124
1b	1xpjB00	B:1-123
1c	1xpjC00	C:1-123
1d	1xpjD00	D:1-123

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HAD (186)

Family: Hydrolase_3 (28)

Vibrio cholerae (2)

1a	Hydrolase_3-1xpjD01	D:4-123
1b	Hydrolase_3-1xpjD02	D:4-123
1c	Hydrolase_3-1xpjD03	D:4-123
1d	Hydrolase_3-1xpjD04	D:4-123

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (Q9KVB4_VIBCH | Q9KVB4)

molecular function
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

Asymmetric/Biological Unit
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Description

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Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

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