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(-) Description

Title :  CRYSTAL STRUCTURE OF E.COLI TPR-PROTEIN NLPI
 
Authors :  C. G. Wilson, T. Kajander, L. Regan
Date :  04 Oct 04  (Deposition) - 16 Nov 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nlpi, Tpr, Tetratricopeptide, Lipoprotein, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. G. Wilson, T. Kajander, L. Regan
The Crystal Structure Of Nlpi. A Prokaryotic Tetratricopeptide Repeat Protein With A Globular Fold.
Febs J. V. 272 166 2005
PubMed-ID: 15634341  |  Reference-DOI: 10.1111/J.1432-1033.2004.04397.X

(-) Compounds

Molecule 1 - LIPOPROTEIN NLPI
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: NLPI
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
2TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:165 , GLU A:235 , PHE A:268 , VAL A:269 , GLU A:270 , HOH A:4824BINDING SITE FOR RESIDUE TRS A 4617
2AC2SOFTWAREHOH A:4803 , PHE B:165 , GLU B:235 , PHE B:268 , VAL B:269 , GLU B:270 , HOH B:4814 , HOH B:4820BINDING SITE FOR RESIDUE TRS B 4618

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XNF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XNF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XNF)

(-) PROSITE Motifs  (2, 8)

Asymmetric/Biological Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TPRPS50005 TPR repeat profile.NLPI_ECOLI62-95
 
96-129
 
234-267
 		  6A:62-95
B:62-95
A:96-129
B:96-129
A:234-267
B:234-267
NLPI_SHIFL62-95
 
96-129
 
234-267
 		  6A:62-95
B:62-95
A:96-129
B:96-129
A:234-267
B:234-267
NLPI_ECO5762-95
 
96-129
 
234-267
 		  6A:62-95
B:62-95
A:96-129
B:96-129
A:234-267
B:234-267
NLPI_ECOL662-95
 
96-129
 
234-267
 		  6A:62-95
B:62-95
A:96-129
B:96-129
A:234-267
B:234-267
2TPR_REGIONPS50293 TPR repeat region circular profile.NLPI_ECOLI62-163
 
234-267
 		  4A:62-163
B:62-163
A:234-267
B:234-267
NLPI_SHIFL62-163
 
234-267
 		  4A:62-163
B:62-163
A:234-267
B:234-267
NLPI_ECO5762-163
 
234-267
 		  4A:62-163
B:62-163
A:234-267
B:234-267
NLPI_ECOL662-163
 
234-267
 		  4A:62-163
B:62-163
A:234-267
B:234-267

(-) Exons   (0, 0)

(no "Exon" information available for 1XNF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:259
 aligned with NLPI_ECO57 | P0AFB3 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:259
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275         
           NLPI_ECO57    26 KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
               SCOP domains d1xnfa_ A: Lipoprotein NlpI                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1xnfA00 A:26-284  [code=1.25.40.10, no name defined]                                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhh.hhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------------------------------------TPR  PDB: A:62-95 UniProt: 62-95  TPR  PDB: A:96-129 UniProt: 96-129--------------------------------------------------------------------------------------------------------TPR  PDB: A:234-267               ----------------- PROSITE (1)
                PROSITE (2) ------------------------------------TPR_REGION  PDB: A:62-163 UniProt: 62-163                                                             ----------------------------------------------------------------------TPR_REGION  PDB: A:234-267        ----------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xnf A  26 KSEVLAVPLQPTLQQEVILARmEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDmPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLmERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
                                    35        45 |      55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215|      225       235       245       255       265       275         
                                                47-MSE                                          95-MSE                                                                                                                  216-MSE                                                                


Chain A from PDB  Type:PROTEIN  Length:259
 aligned with NLPI_ECOL6 | P0AFB2 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:259
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275         
           NLPI_ECOL6    26 KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
               SCOP domains d1xnfa_ A: Lipoprotein NlpI                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1xnfA00 A:26-284  [code=1.25.40.10, no name defined]                                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhh.hhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ------------------------------------TPR_REGION  PDB: A:62-163 UniProt: 62-163                                                             ----------------------------------------------------------------------TPR_REGION  PDB: A:234-267        ----------------- PROSITE (5)
                PROSITE (6) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) ------------------------------------TPR  PDB: A:62-95 UniProt: 62-95  TPR  PDB: A:96-129 UniProt: 96-129--------------------------------------------------------------------------------------------------------TPR  PDB: A:234-267               ----------------- PROSITE (7)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xnf A  26 KSEVLAVPLQPTLQQEVILARmEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDmPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLmERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
                                    35        45 |      55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215|      225       235       245       255       265       275         
                                                47-MSE                                          95-MSE                                                                                                                  216-MSE                                                                


Chain A from PDB  Type:PROTEIN  Length:259
 aligned with NLPI_ECOLI | P0AFB1 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:259
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275         
           NLPI_ECOLI    26 KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
               SCOP domains d1xnfa_ A: Lipoprotein NlpI                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1xnfA00 A:26-284  [code=1.25.40.10, no name defined]                                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhh.hhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ------------------------------------TPR  PDB: A:62-95 UniProt: 62-95  TPR  PDB: A:96-129 UniProt: 96-129--------------------------------------------------------------------------------------------------------TPR  PDB: A:234-267               ----------------- PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (7)
                PROSITE (8) ------------------------------------TPR_REGION  PDB: A:62-163 UniProt: 62-163                                                             ----------------------------------------------------------------------TPR_REGION  PDB: A:234-267        ----------------- PROSITE (8)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xnf A  26 KSEVLAVPLQPTLQQEVILARmEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDmPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLmERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
                                    35        45 |      55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215|      225       235       245       255       265       275         
                                                47-MSE                                          95-MSE                                                                                                                  216-MSE                                                                


Chain A from PDB  Type:PROTEIN  Length:259
 aligned with NLPI_SHIFL | P0AFB4 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:259
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275         
           NLPI_SHIFL    26 KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
               SCOP domains d1xnfa_ A: Lipoprotein NlpI                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1xnfA00 A:26-284  [code=1.25.40.10, no name defined]                                                                                                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhh.hhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ------------------------------------TPR_REGION  PDB: A:62-163 UniProt: 62-163                                                             ----------------------------------------------------------------------TPR_REGION  PDB: A:234-267        ----------------- PROSITE (3)
                PROSITE (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ------------------------------------TPR  PDB: A:62-95 UniProt: 62-95  TPR  PDB: A:96-129 UniProt: 96-129--------------------------------------------------------------------------------------------------------TPR  PDB: A:234-267               ----------------- PROSITE (6)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xnf A  26 KSEVLAVPLQPTLQQEVILARmEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDmPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLmERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
                                    35        45 |      55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215|      225       235       245       255       265       275         
                                                47-MSE                                          95-MSE                                                                                                                  216-MSE                                                                


Chain B from PDB  Type:PROTEIN  Length:262
 aligned with NLPI_ECO57 | P0AFB3 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:262
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282  
           NLPI_ECO57    23 SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
               SCOP domains d1xnfb_ B: Lipoprotein NlpI                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1xnfB00 B:23-284  [code=1.25.40.10, no name defined]                                                                                                                                                                                                                   CATH domains
           Pfam domains (1) ---------------------------------------TPR_1-1xnfB01 B:62-95             ------------------------------------------------------------------------------------------------------------------------------------------TPR_2-1xnfB05 B:234-267           ----------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------TPR_1-1xnfB02 B:62-95             ------------------------------------------------------------------------------------------------------------------------------------------TPR_2-1xnfB06 B:234-267           ----------------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------TPR_11-1xnfB03 B:94-161                                             --------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------TPR_11-1xnfB04 B:94-161                                             --------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author hhhhhh...........hhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhh........hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------------------------------TPR  PDB: B:62-95 UniProt: 62-95  TPR  PDB: B:96-129 UniProt: 96-129--------------------------------------------------------------------------------------------------------TPR  PDB: B:234-267               ----------------- PROSITE (1)
                PROSITE (2) ---------------------------------------TPR_REGION  PDB: B:62-163 UniProt: 62-163                                                             ----------------------------------------------------------------------TPR_REGION  PDB: B:234-267        ----------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xnf B  23 SWRKSEVLAVPLQPTLQQEVILARmEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDmPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLmERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
                                    32        42    |   52        62        72        82        92  |    102       112       122       132       142       152       162       172       182       192       202       212   |   222       232       242       252       262       272       282  
                                                   47-MSE                                          95-MSE                                                                                                                  216-MSE                                                                


Chain B from PDB  Type:PROTEIN  Length:262
 aligned with NLPI_ECOL6 | P0AFB2 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:262
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282  
           NLPI_ECOL6    23 SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
               SCOP domains d1xnfb_ B: Lipoprotein NlpI                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1xnfB00 B:23-284  [code=1.25.40.10, no name defined]                                                                                                                                                                                                                   CATH domains
           Pfam domains (1) ---------------------------------------TPR_1-1xnfB01 B:62-95             ------------------------------------------------------------------------------------------------------------------------------------------TPR_2-1xnfB05 B:234-267           ----------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------TPR_1-1xnfB02 B:62-95             ------------------------------------------------------------------------------------------------------------------------------------------TPR_2-1xnfB06 B:234-267           ----------------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------TPR_11-1xnfB03 B:94-161                                             --------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------TPR_11-1xnfB04 B:94-161                                             --------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author hhhhhh...........hhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhh........hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ---------------------------------------TPR_REGION  PDB: B:62-163 UniProt: 62-163                                                             ----------------------------------------------------------------------TPR_REGION  PDB: B:234-267        ----------------- PROSITE (5)
                PROSITE (6) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) ---------------------------------------TPR  PDB: B:62-95 UniProt: 62-95  TPR  PDB: B:96-129 UniProt: 96-129--------------------------------------------------------------------------------------------------------TPR  PDB: B:234-267               ----------------- PROSITE (7)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xnf B  23 SWRKSEVLAVPLQPTLQQEVILARmEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDmPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLmERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
                                    32        42    |   52        62        72        82        92  |    102       112       122       132       142       152       162       172       182       192       202       212   |   222       232       242       252       262       272       282  
                                                   47-MSE                                          95-MSE                                                                                                                  216-MSE                                                                


Chain B from PDB  Type:PROTEIN  Length:262
 aligned with NLPI_ECOLI | P0AFB1 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:262
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282  
           NLPI_ECOLI    23 SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
               SCOP domains d1xnfb_ B: Lipoprotein NlpI                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1xnfB00 B:23-284  [code=1.25.40.10, no name defined]                                                                                                                                                                                                                   CATH domains
           Pfam domains (1) ---------------------------------------TPR_1-1xnfB01 B:62-95             ------------------------------------------------------------------------------------------------------------------------------------------TPR_2-1xnfB05 B:234-267           ----------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------TPR_1-1xnfB02 B:62-95             ------------------------------------------------------------------------------------------------------------------------------------------TPR_2-1xnfB06 B:234-267           ----------------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------TPR_11-1xnfB03 B:94-161                                             --------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------TPR_11-1xnfB04 B:94-161                                             --------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author hhhhhh...........hhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhh........hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (4) ---------------------------------------TPR  PDB: B:62-95 UniProt: 62-95  TPR  PDB: B:96-129 UniProt: 96-129--------------------------------------------------------------------------------------------------------TPR  PDB: B:234-267               ----------------- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (6)
                PROSITE (7) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (7)
                PROSITE (8) ---------------------------------------TPR_REGION  PDB: B:62-163 UniProt: 62-163                                                             ----------------------------------------------------------------------TPR_REGION  PDB: B:234-267        ----------------- PROSITE (8)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xnf B  23 SWRKSEVLAVPLQPTLQQEVILARmEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDmPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLmERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
                                    32        42    |   52        62        72        82        92  |    102       112       122       132       142       152       162       172       182       192       202       212   |   222       232       242       252       262       272       282  
                                                   47-MSE                                          95-MSE                                                                                                                  216-MSE                                                                


Chain B from PDB  Type:PROTEIN  Length:262
 aligned with NLPI_SHIFL | P0AFB4 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:262
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282  
           NLPI_SHIFL    23 SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
               SCOP domains d1xnfb_ B: Lipoprotein NlpI                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1xnfB00 B:23-284  [code=1.25.40.10, no name defined]                                                                                                                                                                                                                   CATH domains
           Pfam domains (1) ---------------------------------------TPR_1-1xnfB01 B:62-95             ------------------------------------------------------------------------------------------------------------------------------------------TPR_2-1xnfB05 B:234-267           ----------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------TPR_1-1xnfB02 B:62-95             ------------------------------------------------------------------------------------------------------------------------------------------TPR_2-1xnfB06 B:234-267           ----------------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------TPR_11-1xnfB03 B:94-161                                             --------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------TPR_11-1xnfB04 B:94-161                                             --------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author hhhhhh...........hhhhhh.hhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhh........hhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------TPR_REGION  PDB: B:62-163 UniProt: 62-163                                                             ----------------------------------------------------------------------TPR_REGION  PDB: B:234-267        ----------------- PROSITE (3)
                PROSITE (4) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (4)
                PROSITE (5) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (5)
                PROSITE (6) ---------------------------------------TPR  PDB: B:62-95 UniProt: 62-95  TPR  PDB: B:96-129 UniProt: 96-129--------------------------------------------------------------------------------------------------------TPR  PDB: B:234-267               ----------------- PROSITE (6)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xnf B  23 SWRKSEVLAVPLQPTLQQEVILARmEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDmPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLmERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 284
                                    32        42    |   52        62        72        82        92  |    102       112       122       132       142       152       162       172       182       192       202       212   |   222       232       242       252       262       272       282  
                                                   47-MSE                                          95-MSE                                                                                                                  216-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (3, 6)

Asymmetric/Biological Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (6, 18)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (NLPI_ECO57 | P0AFB3)
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B   (NLPI_ECOLI | P0AFB1)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B   (NLPI_SHIFL | P0AFB4)
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B   (NLPI_ECOL6 | P0AFB2)
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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