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(-) Description

Title :  CRYSTAL STRUCTURE OF PURE (BA0288) FROM BACILLUS ANTHRACIS AT 1.8 RESOLUTION
 
Authors :  M. P. Boyle, A. K. Kalliomaa, V. Levdikov, E. Blagova, M. J. Fogg, J. A. Brannigan, A. J. Wilkinson, K. S. Wilson
Date :  04 Oct 04  (Deposition) - 16 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Pure, Purine Biosynthesis, Ba0288, Bacillus Anthracis, Spine, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. P. Boyle, A. K. Kalliomaa, V. Levdikov, E. Blagova, M. J. Fogg, J. A. Brannigan, K. S. Wilson, A. J. Wilkinson
Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis At 1. 8 A Resolution
Proteins V. 61 674 2005
PubMed-ID: 16138311  |  Reference-DOI: 10.1002/PROT.20599
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE
    ChainsA, B, C, D, E, F, G, H
    EC Number4.1.1.21
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPET-YSBLIC
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    GenePURE
    Organism ScientificBACILLUS ANTHRACIS
    Organism Taxid1392
    SynonymPURE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1XMP)

(-) Sites  (0, 0)

(no "Site" information available for 1XMP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XMP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XMP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XMP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XMP)

(-) Exons   (0, 0)

(no "Exon" information available for 1XMP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:155
 aligned with Q81ZH8_BACAN | Q81ZH8 from UniProtKB/TrEMBL  Length:161

    Alignment length:155
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     
         Q81ZH8_BACAN     2 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVRE 156
               SCOP domains d1xmpa_ A: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)                                                                                  SCOP domains
               CATH domains 1xmpA00 A:2-156  [code=3.40.50.7700, no name defined]                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh......eeeeeee...hhhhhhhh.....eeeeee......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xmp A   2 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVRE 156
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     

Chain B from PDB  Type:PROTEIN  Length:157
 aligned with Q81ZH8_BACAN | Q81ZH8 from UniProtKB/TrEMBL  Length:161

    Alignment length:157
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       
         Q81ZH8_BACAN     2 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGS 158
               SCOP domains d1xmpb_ B: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)                                                                                    SCOP domains
               CATH domains 1xmpB00 B:2-158  [code=3.40.50.7700, no name defined]                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh......eeeeee....hhhhhhhh.....eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xmp B   2 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGS 158
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       

Chain C from PDB  Type:PROTEIN  Length:164
 aligned with Q81ZH8_BACAN | Q81ZH8 from UniProtKB/TrEMBL  Length:161

    Alignment length:164
                                    1                                                                                                                                                           
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152    
         Q81ZH8_BACAN     - --------MKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVRE 156
               SCOP domains d1xmpc_ C: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)                                                                                           SCOP domains
               CATH domains 1xmpC00 C:-7-156  [code=3.40.50.7700, no name defined]                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh..eeeee.hhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh......eeeeee....hhhhhhhh.....eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xmp C  -7 SSHHHHHHMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVRE 156
                                     2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152    

Chain D from PDB  Type:PROTEIN  Length:155
 aligned with Q81ZH8_BACAN | Q81ZH8 from UniProtKB/TrEMBL  Length:161

    Alignment length:155
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     
         Q81ZH8_BACAN     2 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVRE 156
               SCOP domains d1xmpd_ D: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)                                                                                  SCOP domains
               CATH domains 1xmpD00 D:2-156  [code=3.40.50.7700, no name defined]                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh......eeeeeee...hhhhhhhh.....eeeeee......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xmp D   2 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVRE 156
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     

Chain E from PDB  Type:PROTEIN  Length:155
 aligned with Q81ZH8_BACAN | Q81ZH8 from UniProtKB/TrEMBL  Length:161

    Alignment length:155
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     
         Q81ZH8_BACAN     2 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVRE 156
               SCOP domains d1xmpe_ E: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)                                                                                  SCOP domains
               CATH domains 1xmpE00 E:2-156  [code=3.40.50.7700, no name defined]                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh......eeeeee....hhhhhhhh.....eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xmp E   2 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVRE 156
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151     

Chain F from PDB  Type:PROTEIN  Length:160
 aligned with Q81ZH8_BACAN | Q81ZH8 from UniProtKB/TrEMBL  Length:161

    Alignment length:160
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
         Q81ZH8_BACAN     2 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSELV 161
               SCOP domains d1xmpf_ F: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)                                                                                       SCOP domains
               CATH domains 1xmpF00 F:2-161  [code=3.40.50.7700, no name defined]                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh......eeeeee....hhhhhhhhh....eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xmp F   2 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSELV 161
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain G from PDB  Type:PROTEIN  Length:164
 aligned with Q81ZH8_BACAN | Q81ZH8 from UniProtKB/TrEMBL  Length:161

    Alignment length:164
                                    1                                                                                                                                                           
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152    
         Q81ZH8_BACAN     - --------MKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVRE 156
               SCOP domains d1xmpg_ G: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)                                                                                           SCOP domains
               CATH domains 1xmpG00 G:-7-156  [code=3.40.50.7700, no name defined]                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh..eeeee.hhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh......eeeeee....hhhhhhhh.....eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xmp G  -7 SSHHHHHHMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVRE 156
                                     2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152    

Chain H from PDB  Type:PROTEIN  Length:160
 aligned with Q81ZH8_BACAN | Q81ZH8 from UniProtKB/TrEMBL  Length:161

    Alignment length:160
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
         Q81ZH8_BACAN     2 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSELV 161
               SCOP domains d1xmph_ H: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)                                                                                       SCOP domains
               CATH domains 1xmpH00 H:2-161  [code=3.40.50.7700, no name defined]                                                                                                            CATH domains
           Pfam domains (1) -AIRC-1xmpH01 H:3-154                                                                                                                                    ------- Pfam domains (1)
           Pfam domains (2) -AIRC-1xmpH02 H:3-154                                                                                                                                    ------- Pfam domains (2)
           Pfam domains (3) -AIRC-1xmpH03 H:3-154                                                                                                                                    ------- Pfam domains (3)
           Pfam domains (4) -AIRC-1xmpH04 H:3-154                                                                                                                                    ------- Pfam domains (4)
           Pfam domains (5) -AIRC-1xmpH05 H:3-154                                                                                                                                    ------- Pfam domains (5)
           Pfam domains (6) -AIRC-1xmpH06 H:3-154                                                                                                                                    ------- Pfam domains (6)
           Pfam domains (7) -AIRC-1xmpH07 H:3-154                                                                                                                                    ------- Pfam domains (7)
           Pfam domains (8) -AIRC-1xmpH08 H:3-154                                                                                                                                    ------- Pfam domains (8)
         Sec.struct. author ...eeeee.hhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh......eeeeee....hhhhhhhhhh...eeeee.......hhhhhhhhhh.......ee...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xmp H   2 KSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTNAGLLAAQILGSFHDDIHDALELRREAIEKDVREGSELV 161
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Family: AIRC (12)
1aAIRC-1xmpH01H:3-154
1bAIRC-1xmpH02H:3-154
1cAIRC-1xmpH03H:3-154
1dAIRC-1xmpH04H:3-154
1eAIRC-1xmpH05H:3-154
1fAIRC-1xmpH06H:3-154
1gAIRC-1xmpH07H:3-154
1hAIRC-1xmpH08H:3-154

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q81ZH8_BACAN | Q81ZH8)
molecular function
    GO:0034023    5-(carboxyamino)imidazole ribonucleotide mutase activity    Catalysis of the reaction: 5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole = 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0006189    'de novo' IMP biosynthetic process    The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
    GO:0006164    purine nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q81ZH8_BACAN | Q81ZH84ay3 4ay4 4b4k

(-) Related Entries Specified in the PDB File

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