1XDY - JenaLib

Title :   STRUCTURAL AND BIOCHEMICAL IDENTIFICATION OF A NOVEL BACTERIAL OXIDOREDUCTASE, W-CONTAINING COFACTOR

Authors :   L. Loschi, S. J. Brokx, T. L. Hills, G. Zhang, M. G. Bertero, A. L. Lovering, J. H. Weiner, N. C. Strynadka

Date :   08 Sep 04 (Deposition) - 12 Oct 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)
Biol. Unit 9: I  (1x)
Biol. Unit 10: J  (1x)

Keywords :   Bioinformatics, Sequence Analysis, Electron Transfer, Oxidoreductase, Molybdoenzymes, Molybdopterin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Loschi, S. J. Brokx, T. L. Hills, G. Zhang, M. G. Bertero, A. L. Lovering, J. H. Weiner, N. C. Strynadka
Structural And Biochemical Identification Of A Novel Bacterial Oxidoreductase.
J. Biol. Chem. V. 279 50391 2004
PubMed-ID: 15355966 | Reference-DOI: 10.1074/JBC.M408876200
(for further references see the PDB file header)

Compounds

Molecule 1 - BACTERIAL SULFITE OXIDASE
	Chains	:	A, B, C, D, E, F, G, H, I, J
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMSYZ3
	Expression System Strain	:	JM109 AND SBJ20
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 45-334
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

Structural Features

Chains, Units

		1	2	3	4	5	6	7	8	9	10
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H
Biological Unit 9 (1x)	:									I
Biological Unit 10 (1x)	:										J

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 20)

Asymmetric Unit (2, 20)

No.	Name	Count	Type	Full Name
1	MTE	10	Ligand/Ion	PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
2	W	10	Ligand/Ion	TUNGSTEN ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	MTE	1	Ligand/Ion	PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
2	W	-1	Ligand/Ion	TUNGSTEN ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	MTE	1	Ligand/Ion	PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
2	W	-1	Ligand/Ion	TUNGSTEN ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	MTE	1	Ligand/Ion	PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
2	W	-1	Ligand/Ion	TUNGSTEN ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	MTE	1	Ligand/Ion	PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
2	W	-1	Ligand/Ion	TUNGSTEN ION

Biological Unit 5 (1, 1)

No.	Name	Count	Type	Full Name
1	MTE	1	Ligand/Ion	PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
2	W	-1	Ligand/Ion	TUNGSTEN ION

Biological Unit 6 (1, 1)

No.	Name	Count	Type	Full Name
1	MTE	1	Ligand/Ion	PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
2	W	-1	Ligand/Ion	TUNGSTEN ION

Biological Unit 7 (1, 1)

No.	Name	Count	Type	Full Name
1	MTE	1	Ligand/Ion	PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
2	W	-1	Ligand/Ion	TUNGSTEN ION

Biological Unit 8 (1, 1)

No.	Name	Count	Type	Full Name
1	MTE	1	Ligand/Ion	PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
2	W	-1	Ligand/Ion	TUNGSTEN ION

Biological Unit 9 (1, 1)

No.	Name	Count	Type	Full Name
1	MTE	1	Ligand/Ion	PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
2	W	-1	Ligand/Ion	TUNGSTEN ION

Biological Unit 10 (1, 1)

No.	Name	Count	Type	Full Name
1	MTE	1	Ligand/Ion	PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
2	W	-1	Ligand/Ion	TUNGSTEN ION

Sites (20, 20)

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:102 , VAL A:103 , MTE A:301	BINDING SITE FOR RESIDUE W A 401
02	AC2	SOFTWARE	CYS B:102 , MTE B:302	BINDING SITE FOR RESIDUE W B 402
03	AC3	SOFTWARE	CYS C:102 , MTE C:303	BINDING SITE FOR RESIDUE W C 403
04	AC4	SOFTWARE	ASN D:45 , CYS D:102 , MTE D:304	BINDING SITE FOR RESIDUE W D 404
05	AC5	SOFTWARE	CYS E:102 , VAL E:103 , MTE E:305	BINDING SITE FOR RESIDUE W E 405
06	AC6	SOFTWARE	ASN F:45 , CYS F:102 , MTE F:306	BINDING SITE FOR RESIDUE W F 406
07	AC7	SOFTWARE	CYS G:102 , MTE G:307 , HOH G:426	BINDING SITE FOR RESIDUE W G 407
08	AC8	SOFTWARE	CYS H:102 , VAL H:103 , MTE H:308	BINDING SITE FOR RESIDUE W H 408
09	AC9	SOFTWARE	ASN I:45 , CYS I:102 , MTE I:309	BINDING SITE FOR RESIDUE W I 409
10	BC1	SOFTWARE	ASN J:45 , CYS J:102 , VAL J:103 , MTE J:310	BINDING SITE FOR RESIDUE W J 410
11	BC2	SOFTWARE	ASN A:44 , ASN A:45 , PHE A:46 , TYR A:47 , GLU A:48 , CYS A:102 , THR A:137 , TYR A:160 , ASN A:189 , ARG A:194 , GLY A:202 , PHE A:203 , GLY A:205 , LYS A:207 , W A:401 , HOH A:403 , HOH A:407	BINDING SITE FOR RESIDUE MTE A 301
12	BC3	SOFTWARE	ASN B:44 , ASN B:45 , PHE B:46 , TYR B:47 , GLU B:48 , MET B:100 , CYS B:102 , THR B:137 , TYR B:160 , ASN B:189 , ARG B:194 , GLY B:202 , GLY B:205 , LYS B:207 , W B:402	BINDING SITE FOR RESIDUE MTE B 302
13	BC4	SOFTWARE	ASN C:44 , ASN C:45 , PHE C:46 , TYR C:47 , GLU C:48 , CYS C:102 , THR C:137 , TYR C:160 , ASN C:189 , ARG C:194 , GLY C:202 , PHE C:203 , GLY C:205 , LYS C:207 , W C:403 , HOH C:411 , HOH C:412	BINDING SITE FOR RESIDUE MTE C 303
14	BC5	SOFTWARE	ASN D:44 , ASN D:45 , PHE D:46 , TYR D:47 , GLU D:48 , CYS D:102 , THR D:137 , TYR D:160 , ASN D:189 , ARG D:194 , GLY D:202 , GLY D:205 , LYS D:207 , W D:404 , HOH D:405 , HOH D:407	BINDING SITE FOR RESIDUE MTE D 304
15	BC6	SOFTWARE	ASN E:44 , ASN E:45 , PHE E:46 , TYR E:47 , GLU E:48 , MET E:100 , CYS E:102 , THR E:137 , TYR E:160 , ASN E:189 , ARG E:194 , GLY E:202 , GLY E:205 , LYS E:207 , W E:405 , HOH E:419	BINDING SITE FOR RESIDUE MTE E 305
16	BC7	SOFTWARE	ASN F:44 , ASN F:45 , PHE F:46 , TYR F:47 , GLU F:48 , CYS F:102 , THR F:137 , TYR F:160 , ASN F:189 , ARG F:194 , GLY F:202 , PHE F:203 , GLY F:205 , LYS F:207 , W F:406 , HOH F:414	BINDING SITE FOR RESIDUE MTE F 306
17	BC8	SOFTWARE	ASN G:44 , ASN G:45 , PHE G:46 , TYR G:47 , GLU G:48 , CYS G:102 , THR G:137 , TYR G:160 , ASN G:189 , ARG G:194 , GLY G:202 , GLY G:205 , LYS G:207 , W G:407 , HOH G:408	BINDING SITE FOR RESIDUE MTE G 307
18	BC9	SOFTWARE	ASN H:44 , ASN H:45 , PHE H:46 , TYR H:47 , GLU H:48 , MET H:100 , CYS H:102 , THR H:137 , TYR H:160 , ASN H:189 , ARG H:194 , GLY H:202 , GLY H:205 , LYS H:207 , W H:408	BINDING SITE FOR RESIDUE MTE H 308
19	CC1	SOFTWARE	ASN I:44 , ASN I:45 , PHE I:46 , TYR I:47 , GLU I:48 , CYS I:102 , THR I:137 , TYR I:160 , ASN I:189 , ARG I:194 , GLY I:202 , GLY I:205 , LYS I:207 , W I:409 , HOH I:411	BINDING SITE FOR RESIDUE MTE I 309
20	CC2	SOFTWARE	ASN J:44 , ASN J:45 , PHE J:46 , TYR J:47 , GLU J:48 , CYS J:102 , THR J:137 , TYR J:160 , ASN J:189 , ARG J:194 , GLY J:202 , GLY J:205 , LYS J:207 , W J:410 , HOH J:412 , HOH J:415	BINDING SITE FOR RESIDUE MTE J 310

SS Bonds (0, 0)

Cis Peptide Bonds (24, 24)

Asymmetric Unit

No.	Residues
1	Asp A:66	-	Pro A:67
2	Tyr A:158	-	Pro A:159
3	Ala A:191	-	Pro A:192
4	Tyr B:158	-	Pro B:159
5	Ala B:191	-	Pro B:192
6	Asp C:66	-	Pro C:67
7	Tyr C:158	-	Pro C:159
8	Tyr D:158	-	Pro D:159
9	Ala D:191	-	Pro D:192
10	Asp E:66	-	Pro E:67
11	Tyr E:158	-	Pro E:159
12	Ala E:191	-	Pro E:192
13	Asp F:66	-	Pro F:67
14	Tyr F:158	-	Pro F:159
15	Ala F:191	-	Pro F:192
16	Tyr G:158	-	Pro G:159
17	Ala G:191	-	Pro G:192
18	Tyr H:158	-	Pro H:159
19	Ala H:191	-	Pro H:192
20	Tyr I:158	-	Pro I:159
21	Ala I:191	-	Pro I:192
22	Asp J:66	-	Pro J:67
23	Tyr J:158	-	Pro J:159
24	Ala J:191	-	Pro J:192

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:263
 aligned with MSRP_ECOLI | P76342 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:269
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321         
           MSRP_ECOLI    62 KALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAAQVASLYRGLDL 330
               SCOP domains d1xdya_ A: Bacterial sulfite oxidase YedY                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1xdyA00 A:18-286 Sulfite Oxidase; Chain A, domain 2                                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh......hhhhhh....hhhhh...hhhhhhhhhh.....eeeeee.....eeeehhhhhhh...eeeeeeeee...eeeeeeeeeeehhhhhhhhh......eeeeee......hhhhh............eeeeehhhhhh...eeeeee..ee.hhhhh...eee....hhhhh...eeeeeee.....hhhhhhh......................eeee....------.ee.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xdy A  18 KALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSG------RQPTLLFNGYADQVASLYRGLDL 286
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257      |267       277         
                                                                                                                                                                                                                                                                         257    264

Chain B from PDB  Type:PROTEIN  Length:262
 aligned with MSRP_ECOLI | P76342 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:267
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       
           MSRP_ECOLI    64 LEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAAQVASLYRGLDL 330
               SCOP domains d1xdyb_ B: Bacterial sulfite oxidase YedY                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1xdyB00 B:20-286 Sulfite Oxidase; Chain A, domain 2                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh......hhhhhh....hhhhh...hhhhhhhhhh.....eeeeee.....eeeehhhhh.....eeeeeeeee...eeeeeeeeeeehhhhhhhhh......eeeeee......hhhhh............eeeeehhhhh....eeeeee..ee.hhhhh...eee....hhhhh...eeeeeee.....hhhhhhh......................eeee....-----.eee.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xdy B  20 LEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSG-----QRQPTLLFNGYADQVASLYRGLDL 286
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       | -   |   269       279       
                                                                                                                                                                                                                                                                       257   263

Chain C from PDB  Type:PROTEIN  Length:264
 aligned with MSRP_ECOLI | P76342 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:269
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321         
           MSRP_ECOLI    62 KALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAAQVASLYRGLDL 330
               SCOP domains d1xdyc_ C: Bacterial sulfite oxidase YedY                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1xdyC00 C:18-286 Sulfite Oxidase; Chain A, domain 2                                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh......hhhhhh....hhhhh...hhhhhhhhhh.....eeeeee.....eeeehhhhhhh...eeeeeeee....eeeeeeeeeeehhhhhhhhh......eeeeee......hhhhh............eeeeehhhhhh...eeeeee..ee.hhhhh...eee....hhhhh...eeeeeee.....hhhhhhh......................eeee....-----.eee.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xdy C  18 KALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSG-----QRQPTLLFNGYADQVASLYRGLDL 286
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257     | 267       277         
                                                                                                                                                                                                                                                                         257   263

Chain D from PDB  Type:PROTEIN  Length:263
 aligned with MSRP_ECOLI | P76342 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:268
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321        
           MSRP_ECOLI    62 KALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAAQVASLYRGLD 329
               SCOP domains d1xdyd_ D: Bacterial sulfite oxidase YedY                                                                                                                                                                                                                                    SCOP domains
               CATH domains 1xdyD00 D:18-285 Sulfite Oxidase; Chain A, domain 2                                                                                                                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh......hhhhhh....hhhhh...hhhhhhhhhh......eeeee.....eeehhhhhh.....eeeeeeee....eeeeeeeeeeehhhhhhhhh......eeeeee......hhhhh............eeeeehhhhhh...eeeeee..ee.hhhhh...eee....hhhhh...eeeeeee.....hhhhhhh......................eeee....-----.eee.hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xdy D  18 KALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSG-----QRQPTLLFNGYADQVASLYRGLD 285
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257     | 267       277        
                                                                                                                                                                                                                                                                         257   263

Chain E from PDB  Type:PROTEIN  Length:262
 aligned with MSRP_ECOLI | P76342 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:267
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       
           MSRP_ECOLI    63 ALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAAQVASLYRGLD 329
               SCOP domains d1xdye_ E: Bacterial sulfite oxidase YedY                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1xdyE00 E:19-285 Sulfite Oxidase; Chain A, domain 2                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh......hhhhhh....hhhhh...hhhhhhhhhh.....eeeeee.....eeeehhhhhhh...eeeeeeee....eeeeeeeeeeehhhhhhhhh......eeeeee......hhhhhh...........eeeeehhhhh....eeeeee..ee.hhhhh...eee....hhhhh...eeeeeee.....hhhhhhh......................eeee....-----.eee.hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xdy E  19 ALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSG-----QRQPTLLFNGYADQVASLYRGLD 285
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248        |-    |  268       278       
                                                                                                                                                                                                                                                                        257   263

Chain F from PDB  Type:PROTEIN  Length:262
 aligned with MSRP_ECOLI | P76342 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:268
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322        
           MSRP_ECOLI    63 ALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAAQVASLYRGLDL 330
               SCOP domains d1xdyf_ F: Bacterial sulfite oxidase YedY                                                                                                                                                                                                                                    SCOP domains
               CATH domains 1xdyF00 F:19-286 Sulfite Oxidase; Chain A, domain 2                                                                                                                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh......hhhhhh....hhhhh...hhhhhhhhhh.....eeeeee.....eeeehhhhhhh...eeeeeeee....eeeeeeeeeeehhhhhhh........eeeeee......hhhhh............eeeeehhhhhh...eeeeee..ee.hhhhh...eee....hhhhh...eeeeeee.....hhhhhhh......................eeee....------.ee.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xdy F  19 ALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSG------RQPTLLFNGYADQVASLYRGLDL 286
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248        |-     | 268       278        
                                                                                                                                                                                                                                                                        257    264

Chain G from PDB  Type:PROTEIN  Length:261
 aligned with MSRP_ECOLI | P76342 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:267
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       
           MSRP_ECOLI    64 LEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAAQVASLYRGLDL 330
               SCOP domains d1xdyg_ G: Bacterial sulfite oxidase YedY                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1xdyG00 G:20-286 Sulfite Oxidase; Chain A, domain 2                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee............hhhhhh....hhhhh...hhhhhhhhhh......eeeee.....eeehhhhhhhh..eeeeeeeeee...eeeeeeeeeeehhhhhhhhh......eeeeee......hhhhh............eeeeehhhhhh...eeeeee..ee.hhhhh...eee....hhhhh...eeeeeee.....hhhhhhh......................eeee....------.ee.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xdy G  20 LEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSG------RQPTLLFNGYADQVASLYRGLDL 286
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       | -    |  269       279       
                                                                                                                                                                                                                                                                       257    264

Chain H from PDB  Type:PROTEIN  Length:264
 aligned with MSRP_ECOLI | P76342 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:269
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321         
           MSRP_ECOLI    62 KALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAAQVASLYRGLDL 330
               SCOP domains d1xdyh_ H: Bacterial sulfite oxidase YedY                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1xdyH00 H:18-286 Sulfite Oxidase; Chain A, domain 2                                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh......hhhhhh....hhhhh...hhhhhhhhhh.....eeeeee.....eeeehhhhh.....eeeeeeee....eeeeeeeeeeehhhhhhhhh......eeeeee......hhhhhh...........eeeeehhhhhh...eeeeee..ee.hhhhh...eee....hhhhh...eeeeeee.....hhhhhhh........................ee....-----.....hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xdy H  18 KALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSG-----QRQPTLLFNGYADQVASLYRGLDL 286
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257     | 267       277         
                                                                                                                                                                                                                                                                         257   263

Chain I from PDB  Type:PROTEIN  Length:262
 aligned with MSRP_ECOLI | P76342 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:267
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       
           MSRP_ECOLI    63 ALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAAQVASLYRGLD 329
               SCOP domains d1xdyi_ I: Bacterial sulfite oxidase YedY                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1xdyI00 I:19-285 Sulfite Oxidase; Chain A, domain 2                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh......hhhhhh....hhhhh...hhhhhhhhhh.....eeeeee.....eeeehhhhh.....eeeeeeee....eeeeeeeeeeehhhhhhhhh......eeeeee......hhhhh............eeeeehhhhh....eeeeee..ee.hhhhh...eee....hhhhh...eeeeeee..................................eeee....-----.eee.hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xdy I  19 ALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSG-----QRQPTLLFNGYADQVASLYRGLD 285
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248        |-    |  268       278       
                                                                                                                                                                                                                                                                        257   263

Chain J from PDB  Type:PROTEIN  Length:262
 aligned with MSRP_ECOLI | P76342 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:267
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       
           MSRP_ECOLI    63 ALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAAQVASLYRGLD 329
               SCOP domains d1xdyj_ J: Bacterial sulfite oxidase YedY                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1xdyJ00 J:19-285 Sulfite Oxidase; Chain A, domain 2                                                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh......hhhhhh....hhhhh...hhhhhhhhhh.....eeeeee.....eeeehhhhhhh...eeeeeeeee...eeeeeeeeeeehhhhhhhhh......eeeeee......hhhhh............eeeeehhhhhh...eeeeee..ee.hhhhh...eee....hhhhh...eeeeeee.....hhhhhhh......................eeee....-----.eee.hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xdy J  19 ALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPYVDHPRWSQATERFIGSG-----QRQPTLLFNGYADQVASLYRGLD 285
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248        |-    |  268       278       
                                                                                                                                                                                                                                                                        257   263

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 10)

CATH Domains (1, 10)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Sulfite Oxidase; Chain A, domain 2 (11)

Homologous Superfamily: Sulfite Oxidase; Chain A, domain 2 (11)

Escherichia coli. Organism_taxid: 562. (2)

1a	1xdyG00	G:20-286
1b	1xdyB00	B:20-286
1c	1xdyE00	E:19-285
1d	1xdyF00	F:19-286
1e	1xdyI00	I:19-285
1f	1xdyJ00	J:19-285
1g	1xdyA00	A:18-286
1h	1xdyD00	D:18-285
1i	1xdyC00	C:18-286
1j	1xdyH00	H:18-286

Pfam Domains (0, 0)

Gene Ontology (11, 11)

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	Cis Peptide Bonds
		Ala A:191 - Pro A:192	[ RasMol ]
		Ala B:191 - Pro B:192	[ RasMol ]
		Ala D:191 - Pro D:192	[ RasMol ]
		Ala E:191 - Pro E:192	[ RasMol ]
		Ala F:191 - Pro F:192	[ RasMol ]
		Ala G:191 - Pro G:192	[ RasMol ]
		Ala H:191 - Pro H:192	[ RasMol ]
		Ala I:191 - Pro I:192	[ RasMol ]
		Ala J:191 - Pro J:192	[ RasMol ]
		Asp A:66 - Pro A:67	[ RasMol ]
		Asp C:66 - Pro C:67	[ RasMol ]
		Asp E:66 - Pro E:67	[ RasMol ]
		Asp F:66 - Pro F:67	[ RasMol ]
		Asp J:66 - Pro J:67	[ RasMol ]
		Tyr A:158 - Pro A:159	[ RasMol ]
		Tyr B:158 - Pro B:159	[ RasMol ]
		Tyr C:158 - Pro C:159	[ RasMol ]
		Tyr D:158 - Pro D:159	[ RasMol ]
		Tyr E:158 - Pro E:159	[ RasMol ]
		Tyr F:158 - Pro F:159	[ RasMol ]
		Tyr G:158 - Pro G:159	[ RasMol ]
		Tyr H:158 - Pro H:159	[ RasMol ]
		Tyr I:158 - Pro I:159	[ RasMol ]
		Tyr J:158 - Pro J:159	[ RasMol ]

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Description

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Sites (20, 20)

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Cis Peptide Bonds (24, 24)

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