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(-) Description

Title :  SOLUTION STRUCTURE OF THE TCTEX1 LIGHT CHAIN FROM CHLAMYDOMONAS INNER DYNEIN ARM I1
 
Authors :  H. Wu, M. W. Maciejewski, S. Takebe, S. M. King
Date :  08 Sep 04  (Deposition) - 01 Mar 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (15x)
Keywords :  Chlamydomonas Flagella, Tctex1 Dimer, Nmr Solution Structure, Contractile Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Wu, M. W. Maciejewski, S. Takebe, S. M. King
Solution Structure Of The Tctex1 Dimer Reveals A Mechanism For Dynein-Cargo Interactions
Structure V. 13 213 2005
PubMed-ID: 15698565  |  Reference-DOI: 10.1016/J.STR.2004.11.013
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TCTEX1 LIGHT CHAIN PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23D
    Expression System Strain: BL-21 CELLS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AF039437
    Organism Scientific: CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 3055
    Other Details: FLAGELLA INNER DYNEIN ARM I1

 Structural Features

(-) Chains, Units

  
NMR Structure (15x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1XDX)

(-) Sites  (0, 0)

(no "Site" information available for 1XDX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XDX)

(-) Cis Peptide Bonds  (2, 30)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15Lys A:60 -Pro A:61
21, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15Lys B:60 -Pro B:61

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XDX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XDX)

(-) Exons   (0, 0)

(no "Exon" information available for 1XDX)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
 aligned with O64980_CHLRE | O64980 from UniProtKB/TrEMBL  Length:114

    Alignment length:114
                                    10        20        30        40        50        60        70        80        90       100       110    
         O64980_CHLRE     1 MEGVDPAVEEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVVTCIIMQKNGAGLHTAASCWWDSTTDGSRTVRWENKSMYCICTVFGLAI 114
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee.......eeeeee.........eeeeee....eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 1xdx A   1 MEGVDPAVEEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVVTCIIMQKNGAGLHTAASCWWDSTTDGSRTVRWENKSMYCICTVFGLAI 114
                                    10        20        30        40        50        60        70        80        90       100       110    


Chain B from PDB  Type:PROTEIN  Length:114
 aligned with O64980_CHLRE | O64980 from UniProtKB/TrEMBL  Length:114

    Alignment length:114
                                    10        20        30        40        50        60        70        80        90       100       110    
         O64980_CHLRE     1 MEGVDPAVEEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVVTCIIMQKNGAGLHTAASCWWDSTTDGSRTVRWENKSMYCICTVFGLAI 114
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) --------------Tctex-1-1xdxB01 B:15-114                                                                             Pfam domains (1)
           Pfam domains (2) --------------Tctex-1-1xdxB02 B:15-114                                                                             Pfam domains (2)
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee.......eeeeee.........eeeeee....eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 1xdx B   1 MEGVDPAVEEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVVTCIIMQKNGAGLHTAASCWWDSTTDGSRTVRWENKSMYCICTVFGLAI 114
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1XDX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1XDX)

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: no clan defined [family: Tctex-1] (2)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A,B   (O64980_CHLRE | O64980)
cellular component
    GO:0031514    motile cilium    A cilium which may have a variable arrangement of axonemal microtubules and also contains molecular motors. It may beat with a whip-like pattern that promotes cell motility or transport of fluids and other cells across a cell surface, such as on epithelial cells that line the lumenal ducts of various tissues; or they may display a distinct twirling motion that directs fluid flow asymmetrically across the cellular surface to affect asymmetric body plan organization. Motile cilia can be found in single as well as multiple copies per cell.

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    Lys A:60 - Pro A:61   [ RasMol ]  
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